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64_002_scaffold_43

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Displaying items 1-30 of 91 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_002_scaffold_43_trna_4
unknown

Not on your lists

comp(91..161)
DNA (71bp)
transferRNA Gly
64_002_scaffold_43_trna_3
unknown

Not on your lists

comp(187..270)
DNA (84bp)
transferRNA Leu
64_002_scaffold_43_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1028..1483)
DNA (456bp) protein (152aa)
Protein SprT-like n=41 Tax=Staphylococcus epidermidis RepID=SPRTL_STAEQ rbh
hypothetical protein
Protein SprT-like {ECO:0000255|HAMAP-Rule:MF_00745}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1476..3626)
DNA (2151bp) protein (717aa)
S1 RNA binding domain protein n=35 Tax=Staphylococcus epidermidis RepID=Q5HMF2_STAEQ
Tex-like protein N-terminal domain protein {ECO:0000313|EMBL:EFE60115.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
S1 RNA-binding domain-containing protein
64_002_scaffold_43_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3914..4684)
DNA (771bp) protein (257aa)
RNA polymerase sigma factor n=34 Tax=Staphylococcus epidermidis RepID=Q5HMF1_STAEQ
RNA polymerase sigma factor SigB
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_4
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4659..5138)
DNA (480bp) protein (160aa)
Serine-protein kinase rsbW (EC:2.7.11.1)
Serine-protein kinase RsbW {ECO:0000256|HAMAP-Rule:MF_00638}; EC=2.7.11.1 {ECO:0000256|HAMAP-Rule:MF_00638};; Anti-sigma-B factor {ECO:0000256|HAMAP-Rule:MF_00638}; Sigma-B negative effector RsbW {ECO:0000256|HAMAP-Rule:MF_00638}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Serine-protein kinase RsbW n=64 Tax=Staphylococcus epidermidis RepID=RSBW_STAEQ rbh
64_002_scaffold_43_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5140..5466)
DNA (327bp) protein (109aa)
Anti-sigma-B factor antagonist n=78 Tax=Staphylococcus epidermidis RepID=RSBV_STAEQ
anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_002_scaffold_43_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5566..6567)
DNA (1002bp) protein (334aa)
Sigma factor B regulator protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HME8_STAEQ
rsbU; sigma factor B regulator protein
Sigma factor B regulator protein {ECO:0000313|EMBL:AAW55036.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6912..7274)
DNA (363bp) protein (121aa)
Endoribonuclease MazF; EC=3.1.-.-;; Toxin MazF; mRNA interferase MazF; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
mRNA interferase MazF n=54 Tax=Staphylococcus epidermidis RepID=MAZF_STAEQ
Programmed cell death toxin YdcE
64_002_scaffold_43_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7271..7441)
DNA (171bp) protein (57aa)
Antitoxin MazE n=81 Tax=Staphylococcus epidermidis RepID=MAZE_STAEQ
Programmed cell death antitoxin YdcD
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein {ECO:0000313|EMBL:EFE60121.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_002_scaffold_43_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7528..8676)
DNA (1149bp) protein (383aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Alanine racemase n=31 Tax=Staphylococcus epidermidis RepID=ALR_STAEQ rbh
64_002_scaffold_43_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(8743..9096)
DNA (354bp) protein (118aa)
Holo-[acyl-carrier protein] synthase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Holo-[acyl-carrier-protein] synthase n=31 Tax=Staphylococcus epidermidis RepID=ACPS_STAEQ
64_002_scaffold_43_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9144..9653)
DNA (510bp) protein (170aa)
Uncharacterized protein n=30 Tax=Staphylococcus epidermidis RepID=Q5HME3_STAEQ
Hypothetical protein, ydbS homolog
Uncharacterized protein {ECO:0000313|EMBL:EFE60124.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_002_scaffold_43_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9640..11151)
DNA (1512bp) protein (504aa)
Membrane protein, putative n=21 Tax=Staphylococcus epidermidis RepID=Q5HME2_STAEQ
Hypothetical protein, ydbT homolog
Membrane protein, putative {ECO:0000313|EMBL:AAW55049.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11138..11617)
DNA (480bp) protein (160aa)
Uncharacterized protein n=25 Tax=Staphylococcus epidermidis RepID=Q8CRP7_STAES
Hypothetical protein SAV2074
Uncharacterized protein {ECO:0000313|EMBL:EFE60126.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_002_scaffold_43_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11867..13396)
DNA (1530bp) protein (510aa)
DEAD-box ATP-dependent RNA helicase CshA {ECO:0000256|HAMAP-Rule:MF_01493}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_01493};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=28 Tax=Staphylococcus epidermidis RepID=Y1688_STAEQ rbh
Cold-shock DEAD-box protein A
64_002_scaffold_43_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13696..15051)
DNA (1356bp) protein (452aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopim elate--D-alanyl-D-alanyl ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=25 Tax=Staphylococcus epidermidis RepID=Q5HMD9_STAEQ
64_002_scaffold_43_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15063..16136)
DNA (1074bp) protein (358aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
D-alanine--D-alanine ligase n=30 Tax=Staphylococcus epidermidis RepID=DDL_STAES
64_002_scaffold_43_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16527..17738
DNA (1212bp) protein (404aa)
Cell division protein, FtsW/RodA/SpoVE family n=16 Tax=Staphylococcus epidermidis RepID=Q5HMD7_STAEQ
Cell division protein FtsW
Cell division protein, FtsW/RodA/SpoVE family {ECO:0000313|EMBL:AAW55061.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17837..17974)
DNA (138bp) protein (46aa)
Uncharacterized protein n=66 Tax=Staphylococcus epidermidis RepID=Q5HMD6_STAEQ
Hypothetical protein SAV2085
Uncharacterized protein {ECO:0000313|EMBL:EES37346.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
64_002_scaffold_43_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18117..18326)
DNA (210bp) protein (70aa)
Uncharacterized protein n=25 Tax=Staphylococcus epidermidis RepID=Q5HMD5_STAEQ
Hypothetical protein SAV2086
Uncharacterized protein {ECO:0000313|EMBL:AAW55063.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18333..18626)
DNA (294bp) protein (98aa)
Uncharacterized protein n=57 Tax=Staphylococcus epidermidis RepID=Q5HMD4_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW55064.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18800..20284
DNA (1485bp) protein (495aa)
Cardiolipin synthetase (EC:2.7.8.-)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Cardiolipin synthase n=8 Tax=Staphylococcus epidermidis RepID=C5QD03_STAEP
64_002_scaffold_43_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20466..21119
DNA (654bp) protein (218aa)
HD domain protein n=47 Tax=Staphylococcus epidermidis RepID=Q5HMD2_STAEQ
metal-dependent phosphohydrolase
HD domain protein {ECO:0000313|EMBL:AAW55066.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_002_scaffold_43_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21225..22142)
DNA (918bp) protein (306aa)
Membrane protein insertase YidC n=7 Tax=Staphylococcus epidermidis RepID=C5QD01_STAEP
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Flags: Precursor;; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
lipoprotein
64_002_scaffold_43_24
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22186..22833)
DNA (648bp) protein (216aa)
Thiamin-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Thiamine-phosphate synthase n=1 Tax=Staphylococcus epidermidis NIHLM040 RepID=J0ZJM9_STAEP
64_002_scaffold_43_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22830..23621)
DNA (792bp) protein (264aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=17 Tax=Staphylococcus epidermidis RepID=THIM_STAES
64_002_scaffold_43_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23611..24462)
DNA (852bp) protein (284aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EFE60139.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EFE60139.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=22 Tax=Staphylococcus epidermidis RepID=C5QTN3_STAEP
64_002_scaffold_43_27
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24425..25114)
DNA (690bp) protein (230aa)
Putative thiaminase-2 n=46 Tax=Staphylococcus epidermidis RepID=TENA_STAEQ rbh
TenA family transcription regulator
Uncharacterized protein {ECO:0000313|EMBL:ETJ12884.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
64_002_scaffold_43_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25398..26057)
DNA (660bp) protein (220aa)
Putative transglycosylase SceD {ECO:0000313|EMBL:EFE60141.1}; EC=3.2.-.- {ECO:0000313|EMBL:EFE60141.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Probable transglycosylase SceD n=51 Tax=Staphylococcus epidermidis RepID=SCED_STAEQ rbh
SceD-like transglycosylase, biomarker for vancomycin-intermediate strains
Displaying items 1-30 of 91 in total

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