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64_010_scaffold_233

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_010_scaffold_233_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(298..2172)
DNA (1875bp) protein (625aa)
PTS system transporter subunit IIABC; K02808 PTS system, sucrose-specific IIA component [EC:2.7.1.69]; K02809 PTS system, sucrose-specific IIB component [EC:2.7.1.69]; K02810 PTS system, sucrose-specific IIC component
PTS system, sucrose-specific IIABC component {ECO:0000313|EMBL:CAJ67297.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CAJ67297.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
PTS system, sucrose-specific IIABC component n=61 Tax=Clostridium difficile RepID=T3IG09_CLODC
64_010_scaffold_233_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2177..3841)
DNA (1665bp) protein (555aa)
malL; oligo-1,6-glucosidase (EC:3.2.1.10)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Alpha amylase, catalytic domain protein n=29 Tax=Clostridium difficile RepID=T3IJB3_CLODC
64_010_scaffold_233_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3855..4676)
DNA (822bp) protein (274aa)
Cof-like hydrolase n=2 Tax=Clostridium difficile RepID=G6BR55_CLODI
hydrolase
Putative hydrolase {ECO:0000313|EMBL:CBE02175.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
64_010_scaffold_233_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4775..5539)
DNA (765bp) protein (255aa)
Helix-turn-helix domain, rpiR family protein n=125 Tax=Clostridium difficile RepID=T3ID23_CLODC
transcriptional regulator
RpiR family transcriptional regulator {ECO:0000313|EMBL:CKH70232.1}; Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CEJ96992.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_233_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5536..6285)
DNA (750bp) protein (250aa)
Helix-turn-helix domain, rpiR family protein n=75 Tax=Clostridium difficile RepID=T3IEE5_CLODC
transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CCL24133.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_010_scaffold_233_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6789..7394)
DNA (606bp) protein (202aa)
Hydrolase {ECO:0000313|EMBL:CKH70291.1}; EC=3.5.2.6 {ECO:0000313|EMBL:CKH70291.1};; Putative beta-lactamase-like hydrolase {ECO:0000313|EMBL:CEJ96990.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Metallo-beta-lactamase superfamily protein n=4 Tax=Clostridium difficile RepID=T3T420_CLODI
hydrolase
64_010_scaffold_233_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7573..8211
DNA (639bp) protein (213aa)
Bacterial regulatory s, tetR family protein n=179 Tax=Clostridium difficile RepID=T3IEM5_CLODC
TetR family transcriptional regulator
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQG77645.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_010_scaffold_233_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8343..9005
DNA (663bp) protein (221aa)
Transcriptional regulatory family protein n=92 Tax=Clostridium difficile RepID=T3IG88_CLODC
two-component response regulator
Response regulator receiver domain protein {ECO:0000313|EMBL:CDS83643.1}; Two-component response regulator {ECO:0000313|EMBL:CDT53595.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_233_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9005..10186
DNA (1182bp) protein (394aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
His Kinase A domain protein n=17 Tax=Clostridium difficile RepID=T3IJJ1_CLODC
two-component sensor histidine kinase
64_010_scaffold_233_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10367..13027)
DNA (2661bp) protein (887aa)
ABC-type transport system, permease n=23 Tax=Clostridium difficile RepID=Q188Q1_CLOD6
ABC transporter permease
ABC-type transport system, permease {ECO:0000313|EMBL:CAJ67288.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_233_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13024..13707)
DNA (684bp) protein (228aa)
ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CCL32004.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL32004.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
ABC transporter family protein n=158 Tax=Clostridium difficile RepID=C9XKB6_CLODC
ABC transporter ATP-binding protein
64_010_scaffold_233_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14051..14977)
DNA (927bp) protein (309aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Penicillin binding transpeptidase domain protein n=33 Tax=Clostridium difficile RepID=T2U5G4_CLODI
beta-lactamase
64_010_scaffold_233_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15005..15721)
DNA (717bp) protein (239aa)
Putative membrane protein n=42 Tax=Clostridium difficile RepID=C9XKB4_CLODC
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CEJ96983.1}; Uncharacterised protein {ECO:0000313|EMBL:CKH70540.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
64_010_scaffold_233_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16053..18296
DNA (2244bp) protein (748aa)
ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CAJ67284.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ67284.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Excinuclease ABC subunit A n=25 Tax=Clostridium difficile RepID=T3IIJ7_CLODC
antibiotic resistance ABC transporter ATP-binding protein
64_010_scaffold_233_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18558..20672)
DNA (2115bp) protein (705aa)
hypothetical protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
UvrD/REP helicase N-terminal domain protein n=31 Tax=Clostridium difficile RepID=T3IJS6_CLODC
64_010_scaffold_233_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20756..21592)
DNA (837bp) protein (279aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=35 Tax=Clostridium difficile RepID=T3IIN2_CLODC
AraC family transcription regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CAJ67282.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_233_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22203..22832)
DNA (630bp) protein (210aa)
Phosphatase {ECO:0000313|EMBL:CKH70680.1}; EC=3.1.3.18 {ECO:0000313|EMBL:CKH70680.1};; Putative hydrolase {ECO:0000313|EMBL:CEJ96978.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
HAD hydrolase, IA, variant 1 family protein n=25 Tax=Clostridium difficile RepID=T3IT13_CLODC
phosphohydrolase
64_010_scaffold_233_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22852..23466)
DNA (615bp) protein (205aa)
NUDIX domain protein n=51 Tax=Clostridium difficile RepID=T3IN18_CLODC
DNA repair protein
Putative hydrolase, NUDIX family {ECO:0000313|EMBL:CAJ67278.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_233_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23534..23896)
DNA (363bp) protein (121aa)
Glyoxalase-like family protein {ECO:0000313|EMBL:EQG77983.1}; EC=4.4.1.5 {ECO:0000313|EMBL:EQG77983.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Uncharacterized protein n=201 Tax=Clostridium difficile RepID=C9XKB0_CLODC
hypothetical protein
64_010_scaffold_233_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24194..24658)
DNA (465bp) protein (155aa)
GyrI-like small molecule binding domain protein n=25 Tax=Clostridium difficile RepID=T3IQY2_CLODC
hypothetical protein
Putative transcriptional regulator {ECO:0000313|EMBL:CAJ67276.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
64_010_scaffold_233_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24922..26343)
DNA (1422bp) protein (474aa)
Na+/H+ antiporter n=184 Tax=Clostridium difficile RepID=C9XKA8_CLODC
Na+/H+ antiporter; K03315 Na+:H+ antiporter, NhaC family
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EHJ31623.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
64_010_scaffold_233_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26373..27437)
DNA (1065bp) protein (355aa)
Ornithine racemase {ECO:0000313|EMBL:CAJ67274.1}; EC=5.1.1.12 {ECO:0000313|EMBL:CAJ67274.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Alanine racemase, N-terminal domain protein n=26 Tax=Clostridium difficile RepID=T3IT09_CLODC
amino acid racemase
64_010_scaffold_233_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27422..28831)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=130 Tax=Clostridium difficile RepID=T3IN13_CLODC
component of D-ornithine aminomutase
Uncharacterized protein {ECO:0000313|EMBL:EQG77828.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
64_010_scaffold_233_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28831..31035)
DNA (2205bp) protein (735aa)
D-ornithine aminomutase E component {ECO:0000313|EMBL:CCL23907.1}; EC=5.4.3.5 {ECO:0000313|EMBL:CCL23907.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
D-ornithine aminomutase E component n=135 Tax=Clostridium difficile RepID=Q188N7_CLOD6
oraE; D-ornithine aminomutase E component
64_010_scaffold_233_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31029..31403)
DNA (375bp) protein (125aa)
D-ornithine aminomutase S component {ECO:0000313|EMBL:CEJ96970.1}; EC=5.4.3.5 {ECO:0000313|EMBL:CEJ96970.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
D-ornithine aminomutase S component n=140 Tax=Clostridium difficile RepID=Q188N8_CLOD6
oraS; D-ornithine aminomutase S component
64_010_scaffold_233_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31481..32911)
DNA (1431bp) protein (477aa)
Pyridoxal-phosphate dependent enzyme {ECO:0000313|EMBL:CKH70936.1}; EC=4.2.1.20 {ECO:0000313|EMBL:CKH70936.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Pyridoxal-phosphate dependent protein n=89 Tax=Clostridium difficile RepID=G6BR33_CLODI
pyridoxal-phosphate dependent enzyme
64_010_scaffold_233_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32904..33212)
DNA (309bp) protein (103aa)
Uncharacterized protein n=124 Tax=Clostridium difficile RepID=G6BR32_CLODI
hypothetical protein
2-amino-4-ketopentanoate thiolase alpha subunit {ECO:0000313|EMBL:CCL23904.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
64_010_scaffold_233_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33289..34356)
DNA (1068bp) protein (356aa)
2,4-diaminopentanoate dehydrogenase {ECO:0000313|EMBL:CDS83500.1}; EC=1.4.1.12 {ECO:0000313|EMBL:CDS83500.1};; Dihydrodipicolinate reductase {ECO:0000313|EMBL:CKH70996.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Oxidoreductase , NAD-binding Rossmann fold family protein n=83 Tax=Clostridium difficile RepID=T3IGK5_CLODC
oxidoreductase
64_010_scaffold_233_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34612..35985)
DNA (1374bp) protein (458aa)
Transcriptional regulator, sigma-54-dependent n=48 Tax=Clostridium difficile RepID=Q188N1_CLOD6
rocR; arginine utilization sigma-54 dependent regulatory protein; K06714 arginine utilization regulatory protein
Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CAJ67267.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Displaying 29 items

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