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66_004_scaffold_50

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Displaying items 1-30 of 79 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
66_004_scaffold_50_trna_1
unknown

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1..73
DNA (73bp)
transferRNA Pseudo
66_004_scaffold_50_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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510..1685
DNA (1176bp) protein (392aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
S-adenosylmethionine synthase n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CTG0_CLOPF
66_004_scaffold_50_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1822..2958)
DNA (1137bp) protein (379aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
nagA; N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
N-acetylglucosamine-6-phosphate deacetylase n=3 Tax=Clostridium perfringens RepID=B1BKB9_CLOPF
66_004_scaffold_50_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3095..5329
DNA (2235bp) protein (745aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
recD; helicase, RecD/TraA family; K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Helicase, RecD/TraA family n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BRV0_CLOPF
66_004_scaffold_50_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5347..6309
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1RLW2_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT73197.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
hypothetical protein
66_004_scaffold_50_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6285..6944
DNA (660bp) protein (220aa)
ComF protein, homolog n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BKC2_CLOPF
ComF protein, homolog {ECO:0000313|EMBL:EDS79803.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
competence protein FC; K02242 competence protein ComFC
66_004_scaffold_50_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7397..7936
DNA (540bp) protein (180aa)
Ribosomal subunit interface protein n=8 Tax=Clostridium perfringens RepID=H7CYJ6_CLOPF
raiA; ribosomal subunit interface protein
Ribosomal subunit interface protein {ECO:0000313|EMBL:EIA16374.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_50_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8175..10697
DNA (2523bp) protein (841aa)
Protein translocase subunit SecA n=4 Tax=Clostridium perfringens RepID=SECA_CLOP1
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_50_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10958..11080
DNA (123bp) protein (41aa)
Peptide chain release factor 2 n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=RF2_CLOPS
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000255|HAMAP-Rule:MF_00094}; Short=RF-2 {ECO:0000255|HAMAP-Rule:MF_00094};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
66_004_scaffold_50_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11082..12053
DNA (972bp) protein (324aa)
peptide chain release factor 2 n=1 Tax=Clostridium perfringens RepID=UPI0000DB5E22
prfB; peptide chain release factor 2; K02836 peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
66_004_scaffold_50_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12328..13671)
DNA (1344bp) protein (448aa)
Peptidase family protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TNE2_CLOP1
peptidase
Peptidase family protein {ECO:0000313|EMBL:EDS79815.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
66_004_scaffold_50_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13783..15945
DNA (2163bp) protein (721aa)
RNA-binding protein n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1UYT6_CLOPF
RNA-binding protein {ECO:0000313|EMBL:EDT73286.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
hypothetical protein; K06959 uncharacterized protein
66_004_scaffold_50_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16292..16888
DNA (597bp) protein (199aa)
Putative membrane protein n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1UYT7_CLOPF
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
hypothetical protein
66_004_scaffold_50_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16982..17428)
DNA (447bp) protein (149aa)
rimI; ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128); K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLV4_CLOPF
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EIA16368.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_50_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17428..18132)
DNA (705bp) protein (235aa)
Glycoprotease family protein n=2 Tax=Clostridium perfringens RepID=B1RGG8_CLOPF
Glycoprotease family protein {ECO:0000313|EMBL:EDT26950.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
glycoprotease family protein
66_004_scaffold_50_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18132..18590)
DNA (459bp) protein (153aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=Q0SR18_CLOPS
hypothetical protein; K06925 UPF0079 ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EDT73307.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
66_004_scaffold_50_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18890..19510
DNA (621bp) protein (207aa)
CBS domain-containing protein n=7 Tax=Clostridium perfringens RepID=H7CYI7_CLOPF
hypothetical protein
CBS domain protein {ECO:0000313|EMBL:EDT15588.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
66_004_scaffold_50_trna_2
unknown

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19753..19825
DNA (73bp)
transferRNA Trp
66_004_scaffold_50_trna_3
unknown

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19857..19929
DNA (73bp)
transferRNA Trp
66_004_scaffold_50_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20090..22255
DNA (2166bp) protein (722aa)
cpdC; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
2`,3`-cyclic-nucleotide 2`-phosphodiesterase n=1 Tax=Clostridium perfringens F262 RepID=H7CYI6_CLOPF
2`,3`-cyclic-nucleotide 2`-phosphodiesterase {ECO:0000313|EMBL:EIA16364.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_50_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22395..22577
DNA (183bp) protein (61aa)
Small, acid-soluble spore protein 1 n=11 Tax=Clostridium perfringens RepID=SAS0_CLOPE
small acid-soluble protein Ssp1
Small, acid-soluble spore protein 1 {ECO:0000313|EMBL:EDS79787.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
66_004_scaffold_50_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22856..23995
DNA (1140bp) protein (380aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CTE3_CLOPF
Ser/Thr protein phosphatase family protein {ECO:0000313|EMBL:EDS79724.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Ser/Thr protein phosphatase
66_004_scaffold_50_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23985..26753
DNA (2769bp) protein (923aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BRW6_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT15591.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
hypothetical protein
66_004_scaffold_50_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26979..27875
DNA (897bp) protein (299aa)
ABC transporter, substrate-binding protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RDY2_CLOPF
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EDT27811.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
ABC transporter substrate-binding protein; K09815 zinc transport system substrate-binding protein
66_004_scaffold_50_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28046..29575
DNA (1530bp) protein (510aa)
PTS system, glucose-specific IIBC component; K02763 PTS system, D-glucosamine-specific IIA component [EC:2.7.1.69]; K02764 PTS system, D-glucosamine-specific IIB component [EC:2.7.1.69]; K02765 PTS system, D-glucosamine-specific IIC component
PTS system, glucose-specific IIBC component n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLU5_CLOPF
PTS system, glucose-specific IIBC component {ECO:0000313|EMBL:EIA16359.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_50_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29895..31682
DNA (1788bp) protein (596aa)
MutS domain protein n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1UYU8_CLOPF
MutS domain protein {ECO:0000313|EMBL:EDT73251.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
MutS domain-containing protein
66_004_scaffold_50_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31798..33609
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SR26_CLOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG86030.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
66_004_scaffold_50_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33864..34772
DNA (909bp) protein (303aa)
Exonuclease family protein n=10 Tax=Clostridium perfringens RepID=H7CYH8_CLOPF
exonuclease
Exonuclease family protein {ECO:0000313|EMBL:EDT15540.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
66_004_scaffold_50_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34852..35262
DNA (411bp) protein (137aa)
CBS domain-containing protein n=9 Tax=Clostridium perfringens RepID=H7CYH7_CLOPF
CBS domain-containing protein
CBS domain-containing protein {ECO:0000313|EMBL:EIA16355.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
66_004_scaffold_50_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35428..36192
DNA (765bp) protein (255aa)
UPF0246 protein CPC_2453 n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BKE3_CLOPF
UPF0246 protein CPC_2453 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
hypothetical protein; K09861 hypothetical protein
Displaying items 1-30 of 79 in total

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