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71_003_scaffold_6

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Displaying items 91-120 of 188 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_6_91
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(102265..103584)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NGU1_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30989.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein; K07133
71_003_scaffold_6_92
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(103866..104753)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Nocardiopsis ganjiahuensis RepID=UPI0003480DA7
Xylose isomerase {ECO:0000313|EMBL:KFI91577.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
xylose isomerase
71_003_scaffold_6_93
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(104884..106542)
DNA (1659bp) protein (553aa)
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:KFI91578.1}; EC=3.2.1.37 {ECO:0000313|EMBL:KFI91578.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
xylan 1,4-beta-xylosidase (EC:3.2.1.37)
Xylan 1,4-beta-xylosidase n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4J2H2_BIFAP
71_003_scaffold_6_94
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(106622..108736)
DNA (2115bp) protein (705aa)
family 36 glycoside hydrolase; K07407 alpha-galactosidase [EC:3.2.1.22]
Alpha-galactosidase n=1 Tax=Gardnerella vaginalis JCP7275 RepID=S4HBQ0_GARVA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30986.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_003_scaffold_6_95
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(108856..109986)
DNA (1131bp) protein (377aa)
Glycerate kinase {ECO:0000313|EMBL:KFI91580.1}; EC=2.7.1.31 {ECO:0000313|EMBL:KFI91580.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
glycerate kinase; K00865 glycerate kinase [EC:2.7.1.31]
Glycerate kinase n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5Y156_9BIFI
71_003_scaffold_6_96
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

110181..111302
DNA (1122bp) protein (374aa)
LacI-type transcriptional regulator n=1 Tax=Bifidobacterium longum E18 RepID=V6XY96_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30984.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator; K02529 LacI family transcriptional regulator
71_003_scaffold_6_97
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(111973..112980)
DNA (1008bp) protein (336aa)
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KFI91582.1}; EC=1.1.1.79 {ECO:0000313|EMBL:KFI91582.1};; EC=1.1.1.81 {ECO:0000313|EMBL:KFI91582.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
2-hydroxyacid-family dehydrogenase (EC:1.1.1.95)
2-hydroxyacid dehydrogenase n=1 Tax=Streptomyces sp. Wigar10 RepID=UPI000378ACEC
71_003_scaffold_6_98
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(113221..113700)
DNA (480bp) protein (160aa)
Putative transcriptional regulator, MerR family n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GN22_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30982.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator, MerR family
71_003_scaffold_6_99
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

113948..114955
DNA (1008bp) protein (336aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VC51_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30981.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Oxidoreductase
71_003_scaffold_6_100
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(115028..116854)
DNA (1827bp) protein (609aa)
Beta-glucuronidase {ECO:0000313|EMBL:KFI91585.1}; EC=3.2.1.31 {ECO:0000313|EMBL:KFI91585.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000378D80A
uidA; beta-D-glucuronidase
71_003_scaffold_6_101
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

117175..117903
DNA (729bp) protein (243aa)
Filamentation induced by cAMP protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L220_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30979.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Fic family protein
71_003_scaffold_6_102
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

118075..118947
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FF96_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30978.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_003_scaffold_6_103
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

118967..120274
DNA (1308bp) protein (436aa)
two-component system sensor histidine kinase; K14155 cystathione beta-lyase [EC:4.4.1.8]
Two-component system sensor histidine kinase n=2 Tax=Bifidobacterium adolescentis RepID=A1A133_BIFAA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30977.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_003_scaffold_6_104
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(120373..120930)
DNA (558bp) protein (186aa)
TetR family transcriptional regulator n=5 Tax=Bifidobacterium RepID=E3EP14_BIFBS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30976.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ybjK; putative HTH-type transcriptional regulator
71_003_scaffold_6_105
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(120954..121724)
DNA (771bp) protein (257aa)
lacA; galactoside O-acetyltransferase; K00633 galactoside O-acetyltransferase [EC:2.3.1.18]
Galactoside O-acetyltransferase n=12 Tax=Bifidobacterium RepID=D6ZT89_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30975.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_003_scaffold_6_106
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

121983..123416
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI000315CCAE
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30974.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
drug resistance transporter, EmrB/QacA subfamily
71_003_scaffold_6_107
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

123513..125912
DNA (2400bp) protein (800aa)
Cation-transporting ATPase CtpE {ECO:0000313|EMBL:KFI91593.1}; EC=3.6.3.8 {ECO:0000313|EMBL:KFI91593.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ctpE; cation-transporting ATPase CtpE (EC:3.6.3.6); K01552 [EC:3.6.3.-]
Cation-transporting ATPase CtpE n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IMQ2_BIFBI
71_003_scaffold_6_108
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(125989..126708)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Clostridium difficile F501 RepID=T4C611_CLODI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30972.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_003_scaffold_6_109
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

126834..127451
DNA (618bp) protein (206aa)
TetR-type transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVF1_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30971.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
TetR-type transcriptional regulator
71_003_scaffold_6_110
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(127441..128217)
DNA (777bp) protein (259aa)
Trans-aconitate methyltransferase {ECO:0000313|EMBL:KFI91596.1}; EC=2.1.1.144 {ECO:0000313|EMBL:KFI91596.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
tam; trans-aconitate methyltransferase; K00598 trans-aconitate 2-methyltransferase [EC:2.1.1.144]
Uncharacterized protein n=1 Tax=Bifidobacterium longum E18 RepID=V6XXA5_BIFLN
71_003_scaffold_6_111
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

128374..128661
DNA (288bp) protein (96aa)
Transcriptional regulator n=4 Tax=Bifidobacterium RepID=I3WHX3_BIFBI
Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:ERI82951.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transcriptional regulator
71_003_scaffold_6_112
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(128731..130611)
DNA (1881bp) protein (627aa)
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFI91598.1}; EC=3.6.3.44 {ECO:0000313|EMBL:KFI91598.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K3F9_9FIRM
ABC transporter
71_003_scaffold_6_113
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(130608..132404)
DNA (1797bp) protein (599aa)
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K3F8_9FIRM
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30967.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
71_003_scaffold_6_114
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

132710..133576
DNA (867bp) protein (289aa)
LysR substrate binding domain protein n=3 Tax=Bifidobacterium breve RepID=F6C5A5_BIFBA
LysR substrate binding domain-containing protein {ECO:0000313|EMBL:KFI91600.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
LysR substrate binding domain-containing protein
71_003_scaffold_6_115
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(133900..135210)
DNA (1311bp) protein (437aa)
bgl5; beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
Glycosyl hydrolase family 3 N-terminal domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9Z6_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30965.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_003_scaffold_6_116
Bifidobacterium tsurumiense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(135224..136051)
DNA (828bp) protein (276aa)
Putative beta-glucosidase {ECO:0000313|EMBL:KFJ04422.1}; EC=3.2.1.21 {ECO:0000313|EMBL:KFJ04422.1};; TaxID=356829 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium tsurumiense.;"
bgl5; beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
Bgl5 Beta-glucosidase n=2 Tax=Bifidobacterium dentium RepID=D2Q805_BIFDB
71_003_scaffold_6_117
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(136048..136209)
DNA (162bp) protein (54aa)
bgl5; beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
Glycosyl hydrolase family 3 N-terminal domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q9Z6_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30963.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_003_scaffold_6_118
Bifidobacterium tsurumiense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(136206..136376)
DNA (171bp) protein (57aa)
Putative beta-glucosidase {ECO:0000313|EMBL:KFJ04422.1}; EC=3.2.1.21 {ECO:0000313|EMBL:KFJ04422.1};; TaxID=356829 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium tsurumiense.;"
bgl5; beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
Bgl5 Beta-glucosidase n=2 Tax=Bifidobacterium dentium RepID=D2Q805_BIFDB
71_003_scaffold_6_119
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

136766..137659
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W5Y7_9CLOT
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30962.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
LysR substrate binding domain-containing protein
71_003_scaffold_6_120
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(137654..138217)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL03T12C18 RepID=I8YV53_BACOV
NADPH-dependent FMN reductase {ECO:0000313|EMBL:KFI91602.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Displaying items 91-120 of 188 in total

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