ggKbase home page

71_003_scaffold_6

Search features with annotation key words

Displaying items 121-150 of 188 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_003_scaffold_6_121
Bifidobacterium saguini, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(138581..139747)
DNA (1167bp) protein (389aa)
Alcohol dehydrogenase (NADP( )) {ECO:0000313|EMBL:KFI92319.1}; EC=1.1.1.2 {ECO:0000313|EMBL:KFI92319.1};; TaxID=1437607 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saguini DSM 23967.;"
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family n=2 Tax=Faecalibacterium prausnitzii RepID=D4K5J3_9FIRM
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
71_003_scaffold_6_122
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

139918..140505
DNA (588bp) protein (196aa)
Transcriptional regulator, TetR family n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LDN1_9FIRM
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30960.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
TetR family transcriptional regulator
71_003_scaffold_6_123
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

140612..141346
DNA (735bp) protein (245aa)
Putative flavodoxin n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAE0_9CLOT
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30959.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
flavodoxin
71_003_scaffold_6_124
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

141461..142114
DNA (654bp) protein (218aa)
Flavodoxin n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KCR9_CLOPA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30958.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
flavodoxin
71_003_scaffold_6_125
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

142126..143217
DNA (1092bp) protein (364aa)
ApbE family lipoprotein n=2 Tax=Bacteria RepID=C8WMB0_EGGLE
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30957.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
71_003_scaffold_6_126
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

144146..144691
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9WR01_9CLOT
Putative mobilization protein MobA {ECO:0000313|EMBL:KFI91608.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_003_scaffold_6_127
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

145392..148058
DNA (2667bp) protein (889aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
sensor protein KdpD (EC:2.7.13.3); K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AGZ3_9CLOT
71_003_scaffold_6_128
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

148051..148749
DNA (699bp) protein (233aa)
XRE family transcriptional regulator {ECO:0000313|EMBL:KFI91610.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFI91610.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AC72_9CLOT
KDP operon transcriptional regulatory protein KdpE; K07667 two-component system, OmpR family, KDP operon response regulator KdpE
71_003_scaffold_6_129
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

149285..151063
DNA (1779bp) protein (593aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12); K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12]
Potassium-transporting ATPase A chain n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A9S5_9CLOT
71_003_scaffold_6_130
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

151076..153136
DNA (2061bp) protein (687aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
potassium-transporting ATPase subunit B; K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12]
Potassium-transporting ATPase B chain n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6A7_9CLOT
71_003_scaffold_6_131
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

153154..153807
DNA (654bp) protein (218aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
potassium-transporting ATPase subunit C; K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
Potassium-transporting ATPase C chain n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AGZ8_9CLOT
71_003_scaffold_6_132
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

154007..154282
DNA (276bp) protein (92aa)
Transposase n=1 Tax=Bifidobacterium longum E18 RepID=V6XUR8_BIFLN
putative transposase
Transposase {ECO:0000313|EMBL:ESV33212.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
71_003_scaffold_6_133
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(154244..154465)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZRH1_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30946.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional activator protein CopR family protein
71_003_scaffold_6_134
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(154503..155081)
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=F6C5D7_BIFBA
Uncharacterized protein {ECO:0000313|EMBL:KFI91300.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_003_scaffold_6_135
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

155389..155763
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KFI91301.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_003_scaffold_6_136
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(155887..156879)
DNA (993bp) protein (331aa)
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) n=2 Tax=Clostridium RepID=R5M3X6_9CLOT
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30943.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
71_003_scaffold_6_137
unknown

Not on your lists

157014..157676
DNA (663bp) protein (221aa)

This feature has no annotations

71_003_scaffold_6_138
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

157698..159077
DNA (1380bp) protein (460aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=C5E7X8_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:KFI91304.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein; K07133
71_003_scaffold_6_139
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(159099..159464)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E7X9_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:KFI91305.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_003_scaffold_6_140
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(159461..160462)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI00028945D2
Uncharacterized protein {ECO:0000313|EMBL:KFI91306.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_003_scaffold_6_141
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(160609..161970)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G5C5_BIFLO
ATPase {ECO:0000313|EMBL:KFI91307.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_003_scaffold_6_142
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

162439..163140
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXV9_9CLOT
Flavodoxin {ECO:0000313|EMBL:KFI91308.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
putative flavodoxin
71_003_scaffold_6_143
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

163191..164165
DNA (975bp) protein (325aa)
Aldehyde oxidase {ECO:0000313|EMBL:KFI91309.1}; EC=1.1.1.317 {ECO:0000313|EMBL:KFI91309.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CCB0_9CLOT
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
71_003_scaffold_6_144
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

164194..165048
DNA (855bp) protein (285aa)
2,5-diketo-D-gluconic acid reductase {ECO:0000313|EMBL:KFI91310.1}; EC=1.1.1.188 {ECO:0000313|EMBL:KFI91310.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Uncharacterized protein n=2 Tax=Coprobacillus RepID=C3RHX7_9FIRM
putative oxidoreductase
71_003_scaffold_6_145
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

165075..166121
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6J9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14187.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
71_003_scaffold_6_146
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

166137..167438
DNA (1302bp) protein (434aa)
Ferric reductase n=1 Tax=Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) RepID=I1W7W6_BIFAR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30933.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ferric reductase
71_003_scaffold_6_147
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(167442..168338)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M9B7_9FIRM
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30932.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Transcriptional regulator
71_003_scaffold_6_148
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(168823..169056)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Bacteroides salyersiae CL02T12C01 RepID=I8Y689_9BACE
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30931.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative short-chain dehydrogenase
71_003_scaffold_6_149
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

169058..169378
DNA (321bp) protein (107aa)
Probable LysR-type transcriptional regulator n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G714_BIFLO
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30930.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
LysR-type transcriptional regulator
71_003_scaffold_6_150
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

169541..170062
DNA (522bp) protein (174aa)
General stress protein 14 {ECO:0000313|EMBL:KFI91315.1}; EC=1.6.5.2 {ECO:0000313|EMBL:KFI91315.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
General stress protein 14 n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RDH7_9BIFI
general stress protein 14
Displaying items 121-150 of 188 in total

View Taxonomy