ggKbase home page

71_008_scaffold_63

Search features with annotation key words

Displaying items 1-30 of 59 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_008_scaffold_63_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

98..622
DNA (525bp) protein (175aa)
ABC transporter ATP-binding protein (EC:3.6.3.31)
ABC transporter-related protein n=5 Tax=Bifidobacterium bifidum RepID=E3EQG2_BIFBS
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR51083.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
71_008_scaffold_63_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

619..1716
DNA (1098bp) protein (366aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=U2CFV7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53619.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_63_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1893..2174
DNA (282bp) protein (94aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=I3WJH9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53620.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_63_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2379..3746
DNA (1368bp) protein (456aa)
Permease protein of ABC transporter system n=7 Tax=Bifidobacterium bifidum RepID=E3EQG5_BIFBS
ABC transporter permease; K02004 putative ABC transport system permease protein
Permease protein of ABC transporter system {ECO:0000313|EMBL:KFI43792.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_63_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3743..4966
DNA (1224bp) protein (408aa)
ATP-binding protein of ABC transporter system n=5 Tax=Bifidobacterium bifidum RepID=E3EQG6_BIFBS
ABC transporter ATP-binding protein; K02004 putative ABC transport system permease protein
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ADO53622.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_63_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4979..5614
DNA (636bp) protein (212aa)
ATP-binding protein of ABC transporter system n=4 Tax=Bifidobacterium bifidum RepID=E3EQG7_BIFBS
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKE49891.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_008_scaffold_63_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5865..6146
DNA (282bp) protein (94aa)
Branched-chain amino acid transport protein AzlD n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBW2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:CDB23135.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_008_scaffold_63_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6216..6827)
DNA (612bp) protein (204aa)
NAD-dependent oxidoreductase (EC:1.1.1.179)
NAD-dependent oxidoreductase {ECO:0000313|EMBL:KFI43796.1}; EC=1.1.1.179 {ECO:0000313|EMBL:KFI43796.1};; EC=1.3.1.20 {ECO:0000313|EMBL:KFI43796.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
NAD-dependent oxidoreductase n=2 Tax=Bifidobacterium bifidum RepID=E3EQG9_BIFBS
71_008_scaffold_63_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6836..7270)
DNA (435bp) protein (145aa)
Putative oxidoreductase n=2 Tax=Bifidobacterium bifidum RepID=I3WJI4_BIFBI
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:AFL05047.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_008_scaffold_63_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7497..8015)
DNA (519bp) protein (173aa)
ptpA; putative low molecular weight protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=2 Tax=Bifidobacterium bifidum RepID=E4VBV9_BIFBI
Putative low molecular weight protein-tyrosine-phosphatase {ECO:0000313|EMBL:EKE49894.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
71_008_scaffold_63_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8085..8744)
DNA (660bp) protein (220aa)
dfrA; dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=8 Tax=Bifidobacterium RepID=E3EQH1_BIFBS
Dihydrofolate reductase {ECO:0000313|EMBL:EKF16589.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_008_scaffold_63_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8792..9664)
DNA (873bp) protein (291aa)
thyA; thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Thymidylate synthase n=2 Tax=Bifidobacterium bifidum RepID=E3EQH2_BIFBS
71_008_scaffold_63_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10117..10530
DNA (414bp) protein (138aa)
OsmC-like protein n=2 Tax=Bifidobacterium bifidum RepID=U2DPB0_BIFBI
putative redox protein
Putative redox protein {ECO:0000313|EMBL:AFL05052.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_008_scaffold_63_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10674..11714)
DNA (1041bp) protein (347aa)
Universal stress protein n=4 Tax=Bifidobacterium bifidum RepID=E3EQH4_BIFBS
universal stress protein
Universal stress protein {ECO:0000313|EMBL:AFL05053.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
71_008_scaffold_63_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11994..12800)
DNA (807bp) protein (269aa)
Cell wall-associated protein (NlpC/P60 family domain) {ECO:0000313|EMBL:KFI43802.1}; EC=3.4.19.11 {ECO:0000313|EMBL:KFI43802.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Cell wall-associated protein (NlpC/P60 family domain) n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCF3_9BIFI
NlpC/P60 domain
71_008_scaffold_63_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12951..13973)
DNA (1023bp) protein (341aa)
sle; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:AFL05055.1}; EC=3.5.1.28 {ECO:0000313|EMBL:AFL05055.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJJ2_BIFBI
71_008_scaffold_63_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14138..15280
DNA (1143bp) protein (381aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
serC; phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HQR9_BIFBI
71_008_scaffold_63_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15391..15645
DNA (255bp) protein (85aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=I3WJJ5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53634.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_63_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15652..16920)
DNA (1269bp) protein (423aa)
senX3; sensor-like histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CH91_BIFBI
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:ERI83413.1}; Two-component sensor kinase {ECO:0000313|EMBL:BAQ98687.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
71_008_scaffold_63_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17104..17784
DNA (681bp) protein (227aa)
Phosphate-specific transport system accessory protein PhoU n=5 Tax=Bifidobacterium bifidum RepID=I3WJJ7_BIFBI
phoU; phosphate transport system regulatory protein
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
71_008_scaffold_63_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18005..18274)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HA92_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23122.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
71_008_scaffold_63_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18318..19058)
DNA (741bp) protein (247aa)
gpmA; 2,3-bisphosphoglycerate-dependentphosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifi
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=7 Tax=Bifidobacterium bifidum RepID=E4NYR6_BIFBP
71_008_scaffold_63_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19136..20101)
DNA (966bp) protein (322aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
1,4-dihydroxy-2-naphthoate octaprenyltransferase n=3 Tax=Bifidobacterium bifidum RepID=E4VBU5_BIFBI
menA; 1,4-dihydroxy-2-naphthoateoctaprenyl transferase
71_008_scaffold_63_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20316..22007)
DNA (1692bp) protein (564aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
lysS; Lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=4 Tax=Bifidobacterium bifidum RepID=E3ER65_BIFBS
71_008_scaffold_63_trna_1
unknown

Not on your lists

22137..22210
DNA (74bp)
transferRNA Pro
71_008_scaffold_63_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22374..23561
DNA (1188bp) protein (396aa)
Arabinose efflux permease n=2 Tax=Bifidobacterium bifidum RepID=I3WJK2_BIFBI
araJ; arabinose efflux permease
AraJ-like protein {ECO:0000313|EMBL:KFI43811.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
71_008_scaffold_63_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23738..25801
DNA (2064bp) protein (688aa)
Tetratricopeptide tPR_2 repeat protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MUQ6_BIFBI
Tetratricopeptide tPR_2 repeat protein {ECO:0000313|EMBL:EKF15758.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
71_008_scaffold_63_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25870..26481
DNA (612bp) protein (204aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WJK4_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53643.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_63_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26535..27512)
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER69_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53644.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
71_008_scaffold_63_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27545..29260)
DNA (1716bp) protein (572aa)
PspC domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2BZ36_BIFBI
PspC domain protein {ECO:0000313|EMBL:ERI83479.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98697.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
PspC domain
Displaying items 1-30 of 59 in total

View Taxonomy