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71_012_scaffold_56

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Displaying items 1-30 of 92 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_012_scaffold_56_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(331..1296)
DNA (966bp) protein (322aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2I8J3_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30095.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_012_scaffold_56_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1796..2842)
DNA (1047bp) protein (349aa)
HTH-type transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFE6_BIFBI
Transcription regulator CelR {ECO:0000313|EMBL:KFI93761.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
celR; HTH-type transcriptional regulator
71_012_scaffold_56_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2968..4305
DNA (1338bp) protein (446aa)
ABC transporter substrate-binding protein n=1 Tax=Bifidobacterium minimum RepID=UPI0003B2E2BA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30097.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
MalE-type ABC sugar transport system periplasmic component; K02027 multiple sugar transport system substrate-binding protein
71_012_scaffold_56_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4577..6256
DNA (1680bp) protein (560aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSC1_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30098.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
cell surface protein fimafimbrial subunit
71_012_scaffold_56_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6436..7419
DNA (984bp) protein (328aa)
sortase family protein; K07284 sortase A [EC:3.4.22.70]
Sortase family protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XSB9_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30099.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_012_scaffold_56_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7612..8763
DNA (1152bp) protein (384aa)
Putative lysophospholipase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HB38_BIFBI
Putative lysophospholipase {ECO:0000313|EMBL:KFI93757.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
putative lysophospholipase
71_012_scaffold_56_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8979..10325)
DNA (1347bp) protein (449aa)
gdhA; GdhA NADP-specific glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Glutamate dehydrogenase n=6 Tax=Bifidobacterium RepID=E3ENE6_BIFBS
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_012_scaffold_56_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10497..11219)
DNA (723bp) protein (241aa)
FCD domain protein n=3 Tax=Bifidobacterium RepID=A7A3M3_BIFAD
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30102.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative transcription factor
71_012_scaffold_56_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11390..11902
DNA (513bp) protein (171aa)
putative gluconokinase; K00851 gluconokinase [EC:2.7.1.12]
Shikimate kinase n=2 Tax=Bifidobacterium adolescentis RepID=A7A3M2_BIFAD
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30103.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_012_scaffold_56_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12005..13333
DNA (1329bp) protein (443aa)
Gluconate permease n=2 Tax=Bifidobacterium RepID=A0ZZU6_BIFAA
Gluconate transporter {ECO:0000313|EMBL:KFI93753.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
gluconate permease; K03299 gluconate:H+ symporter, GntP family
71_012_scaffold_56_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13393..14268
DNA (876bp) protein (292aa)
6-phosphogluconate dehydrogenase; K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44]
Phosphogluconate dehydrogenase (Decarboxylating) n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQY3_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30105.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_012_scaffold_56_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14521..14967
DNA (447bp) protein (149aa)
Large-conductance mechanosensitive channel n=7 Tax=Bifidobacterium RepID=E4NXR9_BIFBP
Large-conductance mechanosensitive channel {ECO:0000256|SAAS:SAAS00023935}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel
71_012_scaffold_56_trna_3
unknown

Not on your lists

comp(15085..15157)
DNA (73bp)
transferRNA Ala
71_012_scaffold_56_trna_2
unknown

Not on your lists

comp(15213..15286)
DNA (74bp)
transferRNA Ile
71_012_scaffold_56_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15508..16218
DNA (711bp) protein (237aa)
Putative metal-dependent hydrolase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DP02_BIFLD
Metal-dependent hydrolase {ECO:0000313|EMBL:KFI93750.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
putative metal-dependent hydrolase; K07043
71_012_scaffold_56_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16499..18160
DNA (1662bp) protein (554aa)
Dipeptide-binding ABC transporter, periplasmic substrate-binding component n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RC71_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30108.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Dipeptide-binding ABC transporter, periplasmic substrate-binding component
71_012_scaffold_56_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18304..18486)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NGU1_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30109.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein; K07133
71_012_scaffold_56_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18507..19616)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=B7GSI4_BIFLS
ATPase AAA {ECO:0000313|EMBL:KFI93748.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein; K07133
71_012_scaffold_56_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20110..21165
DNA (1056bp) protein (352aa)
Sugar-binding domain protein n=2 Tax=Bifidobacterium dentium RepID=E0QAG6_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30110.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
LacI family transcriptional regulator
71_012_scaffold_56_18
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21340..22554
DNA (1215bp) protein (405aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000313|EMBL:KFI93746.1}; EC=2.7.1.170 {ECO:0000313|EMBL:KFI93746.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
Anhydro-N-acetylmuramic acid kinase n=4 Tax=Bifidobacterium dentium RepID=D2Q6X0_BIFDB
71_012_scaffold_56_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22678..24198
DNA (1521bp) protein (507aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
rbsA1; ribose transport ATP-binding protein RbsA (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Ribose transport ATP-binding protein RbsA n=2 Tax=Bifidobacterium dentium RepID=D2Q6W9_BIFDB
71_012_scaffold_56_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24295..25305
DNA (1011bp) protein (337aa)
Ribose transport system permease protein RbsC n=4 Tax=Bifidobacterium dentium RepID=D2Q6W8_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30113.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
rbsC1; ribose transporter permease RbsC; K10440 ribose transport system permease protein
71_012_scaffold_56_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25508..26479
DNA (972bp) protein (324aa)
D-ribose-binding protein RbsB n=4 Tax=Bifidobacterium dentium RepID=D2Q6W7_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30114.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
rbsB1; D-ribose-binding protein RbsB; K10439 ribose transport system substrate-binding protein
71_012_scaffold_56_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26636..27115)
DNA (480bp) protein (160aa)
DNA-binding ferritin-like protein for protection from oxidative damage, Dps family protein n=7 Tax=Bifidobacterium RepID=E3ENF6_BIFBS
DNA-binding ferritin-like protein {ECO:0000313|EMBL:KFI93742.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
DNA-binding ferritin-like protein; K04047 starvation-inducible DNA-binding protein
71_012_scaffold_56_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27267..28562)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=E4VCE1_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30116.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein; K03699 putative hemolysin
71_012_scaffold_56_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28683..29753)
DNA (1071bp) protein (357aa)
Sugar-binding domain protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2Z4_BIFAD
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30117.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator, LacI family
71_012_scaffold_56_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30092..30799
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2FB59
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30118.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_012_scaffold_56_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30939..31970
DNA (1032bp) protein (344aa)
ABC transporter, extracellular substrate binding protein, probably Alginate uptake porter n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4ILU7_BIFAP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30119.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter, extracellular substrate binding protein, probably Alginate uptake porter
71_012_scaffold_56_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32012..32473
DNA (462bp) protein (154aa)
ABC transporter, extracellular substrate binding protein, probably Alginate uptake porter n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4ILU7_BIFAP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30120.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter, extracellular substrate binding protein, probably Alginate uptake porter
71_012_scaffold_56_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32907..33749
DNA (843bp) protein (281aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2Z9_BIFAD
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30122.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
Displaying items 1-30 of 92 in total

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