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71_013_scaffold_4

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Displaying items 61-90 of 169 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_013_scaffold_4_60
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(70872..72065)
DNA (1194bp) protein (398aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
aroC; chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase n=5 Tax=Bifidobacterium bifidum RepID=E3EM34_BIFBS
71_013_scaffold_4_61
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

72116..72583
DNA (468bp) protein (156aa)
hypothetical protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEB5_BIFBI
Peptidase A24 {ECO:0000313|EMBL:KFI94366.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
71_013_scaffold_4_62
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(72615..73796)
DNA (1182bp) protein (394aa)
Aminodeoxychorismate lyase n=4 Tax=Bifidobacterium dentium RepID=D2QA30_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31273.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
aminodeoxychorismate lyase; K07082 UPF0755 protein
71_013_scaffold_4_63
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73793..74263)
DNA (471bp) protein (157aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
endonuclease involved in recombination; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=4 Tax=Bifidobacterium bifidum RepID=E4P1B5_BIFBP
71_013_scaffold_4_64
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(74271..76949)
DNA (2679bp) protein (893aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9A4_BIFBI
71_013_scaffold_4_65
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(77059..77298)
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=A7A637_BIFAD
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31270.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_4_66
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(77298..77681)
DNA (384bp) protein (128aa)
Secreted protein n=8 Tax=Bifidobacterium RepID=I3WHN3_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31269.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_4_67
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(77782..78456)
DNA (675bp) protein (225aa)
phosphoglycerate mutase family protein; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase family protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BP74_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31268.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_4_68
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

78509..78874
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P6C0_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31267.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein; K08972 putative membrane protein
71_013_scaffold_4_69
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

78986..79951
DNA (966bp) protein (322aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q889_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31266.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
CTP synthase (UTP-ammonia lyase)
71_013_scaffold_4_70
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(80742..81368)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=8 Tax=Bifidobacterium RepID=E3EM25_BIFBS
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
71_013_scaffold_4_71
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(81657..82466)
DNA (810bp) protein (270aa)
ABC transporter ATP-binding protein (EC:3.6.3.30); K02003 putative ABC transport system ATP-binding protein
ABC transporter ATP-binding protein n=2 Tax=Bifidobacterium dentium RepID=D2QA22_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31264.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_4_72
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(82468..83682)
DNA (1215bp) protein (405aa)
Permease protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM23_BIFBS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31263.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter permease; K02004 putative ABC transport system permease protein
71_013_scaffold_4_73
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(83816..84211)
DNA (396bp) protein (132aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=U2DNX3_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31262.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_4_74
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84720..87488)
DNA (2769bp) protein (923aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
pcrA; ATP-dependent DNA helicase PcrA (EC:3.1.11.5); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
PcrA ATP-dependent DNA helicase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HCG4_9BIFI
71_013_scaffold_4_75
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(87554..89596)
DNA (2043bp) protein (681aa)
Lipopolysaccharide modification acyl transferase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHM5_BIFBI
Lipopolysaccharide modification acyl transferase {ECO:0000313|EMBL:KFI94352.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
lipopolysaccharide modification acyl transferase
71_013_scaffold_4_76
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

89795..90376
DNA (582bp) protein (194aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
xpt; xanthine phosphoribosyltransferase (EC:2.4.2.22); K03816 xanthine phosphoribosyltransferase [EC:2.4.2.22]
Xanthine phosphoribosyltransferase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E537_BIFBR
71_013_scaffold_4_77
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

90530..91876
DNA (1347bp) protein (449aa)
Xanthine/uracil transport protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GSB7_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31258.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
xanthine/uracil transport protein
71_013_scaffold_4_78
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(91930..93177)
DNA (1248bp) protein (416aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GVE3_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31257.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transport protein
71_013_scaffold_4_79
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

93435..94424
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XXE5_9BIFI
Cobalt transporter {ECO:0000313|EMBL:KFI94348.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
czcD2; czcd2
71_013_scaffold_4_80
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(94411..94827)
DNA (417bp) protein (139aa)
Predicted lactoylglutathione lyase n=15 Tax=Bifidobacterium RepID=D6D8X9_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31255.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_4_81
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(94885..95664)
DNA (780bp) protein (260aa)
Putative MSF protein n=1 Tax=Bifidobacterium longum E18 RepID=V6XVQ5_BIFLN
Putative membrane spanning protein {ECO:0000313|EMBL:KFI94346.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_4_82
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(95730..96518)
DNA (789bp) protein (263aa)
GDSL-like lipase/acylhydrolase n=1 Tax=Bifidobacterium thermophilum RBL67 RepID=M4RGN9_9BIFI
GDSL-like lipase/acylhydrolase {ECO:0000313|EMBL:KFI94345.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
GDSL-like lipase/acylhydrolase
71_013_scaffold_4_83
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

96655..98163
DNA (1509bp) protein (503aa)
DNA-binding protein containing ATP-binding domain {ECO:0000313|EMBL:KFI94344.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KFI94344.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Divergent AAA domain protein n=2 Tax=Bifidobacterium breve RepID=D4BP48_BIFBR
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
71_013_scaffold_4_84
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(98291..99706)
DNA (1416bp) protein (472aa)
ABC-type multidrug transport system permease component n=13 Tax=Bifidobacterium longum RepID=B3DSG4_BIFLD
ABC-2 family transporter protein {ECO:0000313|EMBL:KFI94343.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_4_85
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(99693..100931)
DNA (1239bp) protein (413aa)
ABC-type multidrug transport system permease component n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XXF0_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31250.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_4_86
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(101074..102057)
DNA (984bp) protein (328aa)
ABC transporter related n=2 Tax=Bifidobacterium RepID=B7GSD0_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31249.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter; K09687 antibiotic transport system ATP-binding protein
71_013_scaffold_4_87
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(102274..105234)
DNA (2961bp) protein (987aa)
ATPase P-type (Transporting) HAD superfamily subfamily IC n=1 Tax=Collinsella sp. CAG:289 RepID=R7D0V1_9ACTN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31247.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
P-type HAD superfamily ATPase
71_013_scaffold_4_88
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

105692..107020
DNA (1329bp) protein (443aa)
Histidine kinase n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XXF2_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31246.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
signal transduction histidine kinase
71_013_scaffold_4_89
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

107017..107679
DNA (663bp) protein (221aa)
Response regulatorof two-component system n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLZ2_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31245.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
two component transcriptional regulator, LuxR family
Displaying items 61-90 of 169 in total

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