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71_013_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 169 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
71_013_scaffold_4_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..113
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3A197_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75972.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
transposase
71_013_scaffold_4_2
unknown

Not on your lists

1457..1942
DNA (486bp) protein (162aa)

This feature has no annotations

71_013_scaffold_4_3
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2883..3083)
DNA (201bp) protein (67aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus albus 8 RepID=E9SDQ2_RUMAL
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EGC02551.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
XRE family transcriptional regulator; K07729 putative transcriptional regulator
71_013_scaffold_4_4
unknown

Not on your lists

comp(3088..3486)
DNA (399bp) protein (133aa)

This feature has no annotations

71_013_scaffold_4_5
unknown

Not on your lists

4064..4309
DNA (246bp) protein (82aa)

This feature has no annotations

71_013_scaffold_4_6
Bifidobacterium adolescentis CAG:119, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4988..5950
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5GRD7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CCY19960.1}; TaxID=1263057 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium adolescentis CAG:119.;"
hypothetical protein
71_013_scaffold_4_7
RBG_13_Bacteroidetes_44_24_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6051..6821)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI00036A5BB9
hypothetical protein
Tax=RBG_13_Bacteroidetes_44_24_curated
71_013_scaffold_4_8
unknown

Not on your lists

comp(6839..7495)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R3R7_BIFLM
protein
71_013_scaffold_4_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7691..8041
DNA (351bp) protein (117aa)
MazG nucleotide pyrophosphohydrolase n=4 Tax=Bifidobacterium RepID=B7GRX0_BIFLS
MazG nucleotide pyrophosphohydrolase
MazG nucleotide pyrophosphohydrolase {ECO:0000313|EMBL:ACJ52550.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
71_013_scaffold_4_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8628..9233)
DNA (606bp) protein (202aa)
PF12952 domain protein n=1 Tax=Bifidobacterium longum subsp. longum 2-2B RepID=I3AU35_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:AIW55222.1}; TaxID=1685 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve.;"
hypothetical protein
71_013_scaffold_4_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9305..10141)
DNA (837bp) protein (279aa)
Carbon-nitrogen hydrolase n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5Y0V5_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31328.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
carbon-nitrogen hydrolase
71_013_scaffold_4_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10153..10398)
DNA (246bp) protein (82aa)
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31327.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_4_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10423..11166)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Mycobacterium canettii CIPT 140070010 RepID=L0QIC6_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:KFI94417.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_4_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11224..12066)
DNA (843bp) protein (281aa)
Putative HAD superfamily hydrolase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DS86_BIFLD
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31325.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative HAD superfamily hydrolase; K07024
71_013_scaffold_4_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12384..13331
DNA (948bp) protein (316aa)
alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
Alcohol dehydrogenase, catalytic domain protein, GroES-like family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AUX8_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31324.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_4_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13487..14335)
DNA (849bp) protein (283aa)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFI94414.1}; EC=3.6.3.28 {ECO:0000313|EMBL:KFI94414.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
modF; modf; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EAT8_BIFLI
71_013_scaffold_4_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14507..15754)
DNA (1248bp) protein (416aa)
Glycosyltransferase n=3 Tax=Bifidobacterium RepID=K2HW53_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31322.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
glgA; putative glycosyl transferase
71_013_scaffold_4_18
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16032..17354
DNA (1323bp) protein (441aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GX32_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31321.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
major facilitator family protein
71_013_scaffold_4_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17351..19351
DNA (2001bp) protein (667aa)
Xaa-Pro dipeptidyl-peptidase {ECO:0000256|SAAS:SAAS00048444}; EC=3.4.14.11 {ECO:0000256|SAAS:SAAS00048444};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Hydrolase CocE/NonD family protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GX31_BIFLN
Xaa-Pro dipeptidyl-peptidase
71_013_scaffold_4_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19392..20999
DNA (1608bp) protein (536aa)
ABC transporter, substrate-binding protein, family 5 (Fragment) n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GSK5_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31319.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter substrate-binding protein
71_013_scaffold_4_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21109..21570)
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6P1A0_9BIFI
Membrane protein {ECO:0000313|EMBL:KFI94409.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
71_013_scaffold_4_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21710..21940)
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VQC3_9FIRM
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31317.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_4_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21979..23238
DNA (1260bp) protein (420aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=E8MNK9_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31316.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
2CS histidine protein kinase
71_013_scaffold_4_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23297..24832)
DNA (1536bp) protein (512aa)
Glutamate synthase small chain GltD {ECO:0000313|EMBL:KFI94406.1}; EC=1.4.1.13 {ECO:0000313|EMBL:KFI94406.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
gltD; glutamate synthase small chain GltD (EC:1.4.1.14); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
GltD Glutamate synthase [NADPH] small chain n=6 Tax=Bifidobacterium RepID=E4P1F5_BIFBP
71_013_scaffold_4_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24834..29417)
DNA (4584bp) protein (1528aa)
Glutamate synthase {ECO:0000313|EMBL:KFI94405.1}; EC=1.4.1.13 {ECO:0000313|EMBL:KFI94405.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
gltB; ferredoxin-dependent glutamate synthase (EC:1.4.7.1)
Class II glutamine amidotransferase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT73_9BIFI
71_013_scaffold_4_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29787..31067
DNA (1281bp) protein (427aa)
O-acetylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:KFI94404.1}; EC=2.5.1.47 {ECO:0000313|EMBL:KFI94404.1};; EC=2.5.1.49 {ECO:0000313|EMBL:KFI94404.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
O-acetylhomoserine (thiol)-lyase (EC:2.5.1.49)
O-acetylhomoserine (Thiol)-lyase n=6 Tax=Bifidobacterium bifidum RepID=E3EQB5_BIFBS
71_013_scaffold_4_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31257..31694)
DNA (438bp) protein (146aa)
Transmembrane protein n=8 Tax=Bifidobacterium RepID=E3EQZ4_BIFBS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31312.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
71_013_scaffold_4_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31862..33175)
DNA (1314bp) protein (438aa)
coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Coproporphyrinogen III oxidase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AQQ1_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31311.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
71_013_scaffold_4_29
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33356..35236)
DNA (1881bp) protein (627aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Elongation factor 4 n=6 Tax=Bifidobacterium RepID=E4V9D9_BIFBI
lepA; GTP-binding protein
71_013_scaffold_4_30
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


35424..35684
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=4 Tax=Bifidobacterium dentium RepID=D2QA77_BIFDB
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
Displaying items 1-30 of 169 in total

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