ggKbase home page

ar4r2_scaffold_605

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_605_1
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..642
DNA (642bp) protein (214aa)
hypothetical protein id=12553146 bin=BDI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
hypothetical protein
ar4r2_scaffold_605_trna_1
unknown

Not on your lists

777..860
DNA (84bp)
transferRNA
ar4r2_scaffold_605_trna_2
unknown

Not on your lists

891..964
DNA (74bp)
transferRNA
ar4r2_scaffold_605_2
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1037..2344
DNA (1308bp) protein (436aa)
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=28885 species="Bacteria; Proteobacteria; G
Poly(A) polymerase I n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31FF3_THICR rbh
poly(A) polymerase
ar4r2_scaffold_605_3
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2348..2845
DNA (498bp) protein (166aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI85080.1}; EC=2.7.6.3 {ECO:0000313|EMBL:AFI85080.1};; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteo
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XL11_METNJ
ar4r2_scaffold_605_4
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2842..3630
DNA (789bp) protein (263aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; EC=2.1.2.11 {ECO:0000255|HAMAP-Rule:MF_00156};; Ketopantoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_001
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=PANB_HALHL
ar4r2_scaffold_605_5
Pseudomonas cichorii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3645..4529
DNA (885bp) protein (295aa)
pantoate--beta-alanine ligase (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-
Pantothenate synthetase n=1 Tax=Pseudomonas putida (strain GB-1) RepID=PANC_PSEPG
ar4r2_scaffold_605_6
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4593..5519
DNA (927bp) protein (309aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched chain amino acid aminotransferase {ECO:0000313|EMBL:ABB41130.1}; EC=2.6.1.42 {ECO:0000313|EMBL:ABB41130.1};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales
Branched chain amino acid aminotransferase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I93_THICR
ar4r2_scaffold_605_7
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5533..5754
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A4V6_ALKEH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI58131.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimni
ar4r2_scaffold_605_8
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5788..6816
DNA (1029bp) protein (343aa)
Diguanylate cyclase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8A8_9GAMM
diguanylate cyclase
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CCK82155.1}; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" s
ar4r2_scaffold_605_9
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6852..8408)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037453A8 rbh
RNA polymerase sigma 54 subunit RpoN
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="
ar4r2_scaffold_605_10
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8529..8960
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31GC2_THICR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB41801.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira
ar4r2_scaffold_605_11
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8988..10016)
DNA (1029bp) protein (343aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=CG_Thiomicrospira_01
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31G34_THICR rbh
ar4r2_scaffold_605_12
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10037..10651)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000370AD41
hypothetical protein Tax=CG_Thiomicrospira_01
hypothetical protein
ar4r2_scaffold_605_13
Pseudomonas sp. Lz4W, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10675..14112)
DNA (3438bp) protein (1146aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1206777 species="Bacteria; P
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000370D935
transcription-repair coupling factor
ar4r2_scaffold_605_14
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14298..15593
DNA (1296bp) protein (432aa)
Sulfide-quinone reductase {ECO:0000313|EMBL:ABB41765.1}; EC=1.-.-.- {ECO:0000313|EMBL:ABB41765.1};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiac
Sulfide-quinone reductase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31GF8_THICR
sulfide-quinone reductase
ar4r2_scaffold_605_15
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15683..16336
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000380CB30
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB41766.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira
ar4r2_scaffold_605_16
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16378..17628
DNA (1251bp) protein (417aa)
Lipoprotein releasing system, transmembrane protein, LolC/E family n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D8J4_THICA rbh
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein Tax=CG_Thiomicrospira_01
lipoprotein releasing system transmembrane protein LolC/E family
ar4r2_scaffold_605_17
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17621..18316
DNA (696bp) protein (232aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708, ECO:0000256|SAAS:SAAS00041694}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708, ECO:0000256|SAAS:SAAS00041671};; Ta
ABC transporter n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036F4A44
ABC transporter ATP-binding protein
ar4r2_scaffold_605_18
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18395..19285
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:M
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DC55_9GAMM
dihydrodipicolinate synthase
ar4r2_scaffold_605_19
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19309..20400
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000364E6B6
Uncharacterized protein {ECO:0000313|EMBL:KDN96923.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibri
hypothetical protein
ar4r2_scaffold_605_20
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20400..24281
DNA (3882bp) protein (1294aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=CG_Thiomicrospira_01
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCM0_THICA
ar4r2_scaffold_605_21
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24403..26277
DNA (1875bp) protein (625aa)
Sulfate thiol esterase SoxB n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31FD2_THICR rbh
Sulfate thiol esterase Tax=CG_Thiomicrospira_01
Sulfate thiol esterase
ar4r2_scaffold_605_22
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26414..26698)
DNA (285bp) protein (95aa)
peptidyl-prolyl cis-trans isomerase ppiC (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Pisciricketts
Peptidyl-prolyl cis-trans isomerase ppiC n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XKE8_METNJ
ar4r2_scaffold_605_23
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26764..27345)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6GNB6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPJ53613.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbio
fructose-2,6-bisphosphatase
ar4r2_scaffold_605_24
Piscirickettsia salmonis, Piscirickettsia, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27346..29106)
DNA (1761bp) protein (587aa)
recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
hypothetical protein n=1 Tax=Piscirickettsia salmonis RepID=UPI00031ADA74
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:KGP96350.1}; TaxID=1238 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Piscirickettsia.;" s
ar4r2_scaffold_605_25
R_Coxiella_42_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29120..29686)
DNA (567bp) protein (189aa)
Smr DNA repair family protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B596B1
Smr/MutS family protein Tax=RIFCSPHIGHO2_12_FULL_Coxiella_42_15_curated
DNA mismatch repair protein MutS
Displaying 27 items

View Taxonomy