ggKbase home page

ar4r2_scaffold_462

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_462_1
unknown

Not on your lists

78..221
DNA (144bp) protein (48aa)

This feature has no annotations

ar4r2_scaffold_462_trna_1
unknown

Not on your lists

451..538
DNA (88bp)
transferRNA Ser
ar4r2_scaffold_462_2
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

697..2289
DNA (1593bp) protein (531aa)
DNA polymerase III n=1 Tax=Beggiatoa sp. PS RepID=A7BXL9_9GAMM rbh
DNA polymerase III {ECO:0000313|EMBL:EDN68715.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
DNA polymerase III
ar4r2_scaffold_462_3
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2302..4515
DNA (2214bp) protein (738aa)
Glycosyl transferase, group 2 family protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWQ9_9GAMM rbh
Glycosyl transferase, group 2 family protein {ECO:0000313|EMBL:EDN69026.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
glycosyltransferase
ar4r2_scaffold_462_4
unknown

Not on your lists

4556..4975
DNA (420bp) protein (140aa)

This feature has no annotations

ar4r2_scaffold_462_5
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5091..5804)
DNA (714bp) protein (238aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP54921.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_6
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5962..6915)
DNA (954bp) protein (318aa)
MoxR-like ATPase n=1 Tax=Beggiatoa alba B18LD RepID=I3CKP1_9GAMM rbh
MoxR-like ATPase {ECO:0000313|EMBL:EIJ44184.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
MoxR-like ATPase rbh
ar4r2_scaffold_462_7
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7004..7324
DNA (321bp) protein (107aa)
Ferredoxin 2fe-2s protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWG4_9GAMM
2Fe-2S ferredoxin
Ferredoxin 2fe-2s protein {ECO:0000313|EMBL:EDN69118.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
ar4r2_scaffold_462_8
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7791..8216)
DNA (426bp) protein (142aa)
Type II secretion system protein n=1 Tax=Beggiatoa sp. PS RepID=A7BX23_9GAMM
type II secretion system protein
Type II secretion system protein {ECO:0000313|EMBL:BAP55342.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_9
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8209..8451)
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C387_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN66746.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_462_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8448..9881)
DNA (1434bp) protein (478aa)
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Beggiatoa alba B18LD RepID=I3CKF6_9GAMM rbh
mannose-1-phosphate guanyltransferase
Mannose-1-phosphate guanyltransferase {ECO:0000313|EMBL:BAP57354.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_11
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9920..10858)
DNA (939bp) protein (313aa)
Potassium channel protein-like n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLP6_9PLAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55901.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_12
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10983..11942)
DNA (960bp) protein (320aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Beggiatoa alba B18LD RepID=I3CGH9_9GAMM rbh
acetyl-CoA carboxylase, carboxyl transferase subunit beta
ar4r2_scaffold_462_13
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12385..13656
DNA (1272bp) protein (424aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
Serine--tRNA ligase n=1 Tax=Beggiatoa alba B18LD RepID=I3CHG4_9GAMM rbh
seryl-tRNA synthetase
ar4r2_scaffold_462_14
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13668..14123
DNA (456bp) protein (152aa)
Sel1-like repeat n=1 Tax=Beggiatoa sp. PS RepID=A7BY19_9GAMM
Sel1-like repeat {ECO:0000313|EMBL:EDN68562.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
Sel1 domain protein repeat-containing protein
ar4r2_scaffold_462_15
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14419..16734
DNA (2316bp) protein (772aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CFY8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIJ42531.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein rbh
ar4r2_scaffold_462_16
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16818..18125
DNA (1308bp) protein (436aa)
FAD linked oxidase domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TMF6_9CHLR rbh
FAD linked oxidase domain-containing protein
FAD linked oxidase domain-containing protein {ECO:0000313|EMBL:BAP57315.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_17
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18229..18687
DNA (459bp) protein (153aa)
NifZ domain-containing protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CCY1_9GAMM
NifZ domain-containing protein
Tax=BJP_08E140C01_Dechloromonas_61_78
ar4r2_scaffold_462_18
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18820..19410)
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IQX5_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGW23546.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein
ar4r2_scaffold_462_19
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19551..20150
DNA (600bp) protein (200aa)
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L2B1_9PROT
tripartite ATP-independent periplasmic transporter DctQ
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
ar4r2_scaffold_462_20
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20164..21465
DNA (1302bp) protein (434aa)
TRAP transporter, DctM subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CJP1_9GAMM rbh
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EIJ43834.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
C4-dicarboxylate transporter rbh
ar4r2_scaffold_462_21
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21574..24669)
DNA (3096bp) protein (1032aa)
Translation initiation factor IF-2 n=1 Tax=Beggiatoa alba B18LD RepID=I3CJY7_9GAMM rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
translation initiation factor IF-2
ar4r2_scaffold_462_22
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24811..26319)
DNA (1509bp) protein (503aa)
Transcription termination factor NusA n=1 Tax=Beggiatoa alba B18LD RepID=I3CJY6_9GAMM rbh
transcription termination factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_23
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26380..26847)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=1 Tax=Beggiatoa alba B18LD RepID=I3CJY5_9GAMM
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_24
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27218..28051)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CH29_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ42922.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein
ar4r2_scaffold_462_25
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28048..28644)
DNA (597bp) protein (199aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Beggiatoa sp. PS RepID=A7C450_9GAMM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_462_26
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28655..31474)
DNA (2820bp) protein (940aa)
penicillin-binding protein 1a n=1 Tax=Vibrio genomosp. F6 RepID=UPI0002F3F308 rbh
penicillin-binding protein, 1A family
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:BAP58224.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_27
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31788..32942
DNA (1155bp) protein (385aa)
Type IV pilus assembly protein PilM n=1 Tax=Beggiatoa alba B18LD RepID=I3CH32_9GAMM rbh
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:EIJ42925.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
type IV pilus assembly protein PilM
ar4r2_scaffold_462_28
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32956..33567
DNA (612bp) protein (204aa)
Tfp pilus assembly protein PilN n=1 Tax=Beggiatoa alba B18LD RepID=I3CH33_9GAMM
type IV pilus assembly protein PilN
Type IV pilus assembly protein PilN {ECO:0000313|EMBL:BAP58226.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_462_29
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33577..34245
DNA (669bp) protein (223aa)
Tfp pilus assembly protein PilO n=1 Tax=Beggiatoa alba B18LD RepID=I3CH34_9GAMM
type IV pilus assembly protein PilO
Type IV pilus assembly protein PilO {ECO:0000313|EMBL:BAP58227.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Displaying items 1-30 of 35 in total

View Taxonomy