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AMDSBA4_19

Alias: AMDSBA4_C18

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Displaying items 1-30 of 68 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_19_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..926)
DNA (924bp) protein (308aa)
family 5 extracellular solute-binding protein
Extracellular solute-binding protein n=3 Tax=Acidiphilium RepID=F7SBD3_9PROT (db=UNIREF evalue=1.5e-28 bit_score=132.5 identity=35.0 coverage=67.53246753246754)
seg (db=Seg db_id=seg from=9 to=38)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=63 to=297 evalue=9.7e-26)
AMDSBA4_19_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1289..2203)
DNA (915bp) protein (305aa)
Mg2 transporter protein CorA family protein
Magnesium and cobalt transport protein CorA n=1 Tax=Paenibacillus sp. HGF7 RepID=F5LEB8_9BACL (db=UNIREF evalue=1.0e-21 bit_score=109.8 identity=23.9 coverage=93.11475409836065)
transmembrane_regions (db=TMHMM db_id=tmhmm from=276 to=298)
seg (db=Seg db_id=seg from=244 to=253)
AMDSBA4_19_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2509..3405
DNA (897bp) protein (299aa)
binding-protein-dependent transport system inner membrane protein
Peptide/nickel/opine uptake family ABC transporter, permease protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U463_9RHOB (db=UNIREF evalue=3.5e-62 bit_score=244.2 identity=44.3 coverage=97.65886287625418)
transmembrane_regions (db=TMHMM db_id=tmhmm from=262 to=284)
transmembrane_regions (db=TMHMM db_id=tmhmm from=211 to=233)
AMDSBA4_19_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3424..4377
DNA (954bp) protein (318aa)
ABC-type transporter, integral membrane subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U1I4_9FIRM (db=UNIREF evalue=3.3e-143 bit_score=513.5 identity=75.4 coverage=99.37106918238993)
ABC transporter
ABC transporter
AMDSBA4_19_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4379..6013
DNA (1635bp) protein (545aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=53)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=58 to=541 evalue=1.1e-53)
(db=HMMPfam db_id=PF00496 from=105 to=434 evalue=2.0e-24 interpro_id=IPR000914 interpro_description=Bacterial extracellular solute-binding protein, family 5 GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
no description (db=Gene3D db_id=G3DSA:3.90.76.10 from=63 to=195 evalue=3.5e-20)
AMDSBA4_19_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6038..7516)
DNA (1479bp) protein (493aa)
spoIVA; stage IV sporulation protein A
spoIVA; stage IV sporulation protein A
Stage IV sporulation protein A n=1 Tax=Desmospora sp. 8437 RepID=F5SBH0_9BACL (db=UNIREF evalue=6.4e-162 bit_score=576.2 identity=55.1 coverage=99.59432048681542)
AMDSBA4_19_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(7657..8670)
DNA (1014bp) protein (338aa)
glycerol-3-phosphate dehydrogenase (NAD(P)+)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Desulfotomaculum reducens MI-1 RepID=GPDA_DESRM (db=UNIREF evalue=2.9e-57 bit_score=228.0 identity=37.7 coverage=97.92899408284023)
seg (db=Seg db_id=seg from=69 to=77)
NAD_G3PDH (db=PatternScan db_id=PS00957 from=192 to=213 evalue=0.0 interpro_id=IPR006168 interpro_description=Glycerol-3-phosphate dehydrogenase, NAD-dependent GO=Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367), Biological Process: glycerol-3-phosphate metabolic process (GO:0006072), Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_19_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8663..9982)
DNA (1320bp) protein (440aa)
GTP-binding protein engA
GTP-binding protein engA
GTPase Der n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXY2_9FIRM (db=UNIREF evalue=5.1e-110 bit_score=403.7 identity=45.0 coverage=97.95454545454545)
AMDSBA4_19_9
unknown

Not on your lists

comp(10034..10612)
DNA (579bp) protein (193aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=50)
AMDSBA4_19_10
Haloquadratum sp. J07HQX50, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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10720..11277
DNA (558bp) protein (186aa)
bioY; biotin synthesis protein
Biotin synthase n=8 Tax=Lactobacillus reuteri RepID=C0Z146_LACRE (db=UNIREF evalue=2.1e-09 bit_score=68.2 identity=28.6 coverage=88.17204301075269)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=166)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
AMDSBA4_19_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11321..12538)
DNA (1218bp) protein (406aa)
RNA binding S1 domain-containing protein
RNA binding S1 domain-containing protein
RNA binding S1 domain protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M1G4_9FIRM (db=UNIREF evalue=3.5e-97 bit_score=360.9 identity=53.9 coverage=84.97536945812809)
AMDSBA4_19_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12654..13259)
DNA (606bp) protein (202aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=2 Tax=Sulfobacillus acidophilus RepID=G8TZL0_9FIRM (db=UNIREF evalue=1.5e-56 bit_score=224.9 identity=53.5 coverage=91.0891089108911)
Glycerol-3-phosphate (1)-acyltransferase (db=superfamily db_id=SSF69593 from=3 to=186 evalue=3.0e-39)
1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE (db=HMMPanther db_id=PTHR10434 from=1 to=156 evalue=3.1e-34)
AMDSBA4_19_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13256..13948)
DNA (693bp) protein (231aa)
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=KCY_ALKMQ (db=UNIREF evalue=5.9e-41 bit_score=173.3 identity=42.3 coverage=90.47619047619048)
seg (db=Seg db_id=seg from=192 to=204)
seg (db=Seg db_id=seg from=56 to=68)
AMDSBA4_19_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13945..14325)
DNA (381bp) protein (127aa)
Chorismate mutase n=2 Tax=Sulfobacillus acidophilus RepID=G8TZL2_9FIRM (db=UNIREF evalue=8.5e-42 bit_score=175.3 identity=69.4 coverage=96.8503937007874)
chorismate mutase (EC:5.4.99.5)
Chorismate mutase of the AroH class (db=HMMPIR db_id=PIRSF005965 from=1 to=122 evalue=3.2e-57 interpro_id=IPR008243 interpro_description=Chorismate mutase, AroH class)
CM_mono_aroH: chorismate mutase (db=HMMTigr db_id=TIGR01796 from=2 to=117 evalue=7.9e-53 interpro_id=IPR008243 interpro_description=Chorismate mutase, AroH class)
AMDSBA4_19_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14387..14542)
DNA (156bp) protein (52aa)
(db=HMMPfam db_id=PF09963 from=1 to=47 evalue=6.9e-11 interpro_id=IPR019241 interpro_description=Protein of unknown function DUF2197)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I592_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ39740.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA4_19_16
unknown

Not on your lists

14615..15757
DNA (1143bp) protein (381aa)
seg (db=Seg db_id=seg from=103 to=114)
ZF_SWIM (db=ProfileScan db_id=PS50966 from=61 to=95 evalue=8.852 interpro_id=IPR007527 interpro_description=Zinc finger, SWIM-type GO=Molecular Function: zinc ion binding (GO:0008270))
AMDSBA4_19_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15720..16649)
DNA (930bp) protein (310aa)
quinolinate phosphoribosyl transferase
quinolinate phosphoribosyl transferase
Quinolinate phosphoribosyl transferase n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TZL5_9FIRM (db=UNIREF evalue=1.7e-128 bit_score=464.5 identity=77.6 coverage=99.03225806451613)
AMDSBA4_19_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16651..17523)
DNA (873bp) protein (291aa)
rluB; pseudouridine synthase
Pseudouridine synthase n=1 Tax=Desulfotomaculum ruminis DSM 2154 RepID=F6DT72_DESRL (db=UNIREF evalue=2.5e-49 bit_score=201.4 identity=41.0 coverage=95.53264604810997)
PSI_RSU (db=PatternScan db_id=PS01149 from=102 to=116 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600:SF2 from=7 to=236 evalue=9.5e-61)
AMDSBA4_19_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17530..18003)
DNA (474bp) protein (158aa)
endoribonuclease L-PSP
Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G4F1_PHATC (db=UNIREF evalue=2.5e-27 bit_score=127.5 identity=43.9 coverage=92.40506329113924)
YjgF-like (db=superfamily db_id=SSF55298 from=10 to=155 evalue=5.2e-28 interpro_id=IPR013813 interpro_description=Endoribonuclease L-PSP/chorismate mutase-like)
(db=HMMPfam db_id=PF01042 from=21 to=153 evalue=2.6e-22 interpro_id=IPR006175 interpro_description=YjgF/Yer057p/UK114 family)
AMDSBA4_19_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18164..18697
DNA (534bp) protein (178aa)
nucleoside recognition domain-containing protein
Nucleoside recognition domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZL8_9FIRM (db=UNIREF evalue=2.9e-72 bit_score=276.9 identity=76.9 coverage=96.62921348314607)
transmembrane_regions (db=TMHMM db_id=tmhmm from=153 to=175)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
AMDSBA4_19_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18730..19320)
DNA (591bp) protein (197aa)
nucleoside recognition domain-containing protein
Nucleoside recognition n=1 Tax=Acetonema longum DSM 6540 RepID=F7NK18_9FIRM (db=UNIREF evalue=3.3e-45 bit_score=187.2 identity=48.4 coverage=94.9238578680203)
transmembrane_regions (db=TMHMM db_id=tmhmm from=165 to=187)
transmembrane_regions (db=TMHMM db_id=tmhmm from=133 to=155)
AMDSBA4_19_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19383..20237)
DNA (855bp) protein (285aa)
pantothenate synthetase (EC:6.3.2.1) rbh
Pantothenate synthetase n=1 Tax=Psychrobacter arcticus 273-4 RepID=PANC_PSYA2 (db=UNIREF evalue=5.2e-55 bit_score=220.3 identity=46.0 coverage=91.9298245614035)
seg (db=Seg db_id=seg from=31 to=45)
CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE (db=HMMPanther db_id=PTHR21299 from=3 to=281 evalue=5.2e-132)
AMDSBA4_19_23
unknown

Not on your lists

comp(20242..20454)
DNA (213bp) protein (71aa)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=1 to=67 evalue=9.7e-05 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBA4_19_24
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(20482..20913)
DNA (432bp) protein (144aa)
glutaredoxin-like domain-containing protein
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=1 to=115 evalue=1.7e-17 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=3 to=117 evalue=3.6e-17 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
Glutaredoxin-like domain protein {ECO:0000313|EMBL:ACL23004.1}; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chl
AMDSBA4_19_25
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20897..21343)
DNA (447bp) protein (149aa)
rhodanese-related sulfurtransferase
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=24 to=119 evalue=7.1e-32 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=Gene3D db_id=G3DSA:3.40.250.10 from=24 to=121 evalue=5.9e-23 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=HMMSmart db_id=SM00450 from=30 to=125 evalue=2.8e-19 interpro_id=IPR001763 interpro_description=Rhodanese-like)
AMDSBA4_19_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21455..23029)
DNA (1575bp) protein (525aa)
helicase
ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED (db=HMMPanther db_id=PTHR10799 from=35 to=504 evalue=9.6e-124)
ATP-DEPENDENT HELICASE (db=HMMPanther db_id=PTHR10799:SF40 from=35 to=504 evalue=9.6e-124)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=133 to=481 evalue=1.0e-56)
AMDSBA4_19_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23039..23890)
DNA (852bp) protein (284aa)
DNA primase small subunit
DNA ligase D n=5 Tax=Coxiella burnetii RepID=A9ZHU2_COXBE (db=UNIREF evalue=1.7e-26 bit_score=125.6 identity=29.4 coverage=88.73239436619718)
Uncharacterized protein {ECO:0000313|EMBL:AEW05264.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
DNA primase small subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TZM4_SULAD
AMDSBA4_19_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23829..24656)
DNA (828bp) protein (276aa)
lig; ATP dependent DNA ligase
ATP-dependent DNA ligase n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SEZ0_9BACL (db=UNIREF evalue=5.2e-12 bit_score=77.4 identity=26.5 coverage=89.4927536231884)
DNA ligase/mRNA capping enzyme, catalytic domain (db=superfamily db_id=SSF56091 from=6 to=184 evalue=9.2e-44)
(db=HMMPfam db_id=PF01068 from=23 to=184 evalue=5.4e-26 interpro_id=IPR012310 interpro_description=DNA ligase, ATP-dependent, central GO=Molecular Function: DNA ligase (ATP) activity (GO:0003910), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
AMDSBA4_19_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24653..25435)
DNA (783bp) protein (261aa)
Ku protein
Probable DNA repair protein Hoch_3329 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUZ0_HALO1 (db=UNIREF evalue=1.9e-32 bit_score=145.2 identity=31.9 coverage=94.6360153256705)
seg (db=Seg db_id=seg from=209 to=221)
Ku_bact: Ku protein (db=HMMTigr db_id=TIGR02772 from=1 to=253 evalue=8.7e-60 interpro_id=IPR009187 interpro_description=Predicted Ku, prokaryotic type)
AMDSBA4_19_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25540..25989)
DNA (450bp) protein (150aa)
sporulation protein YtfJ
Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B3D5_9BACI (db=UNIREF evalue=2.5e-24 bit_score=117.5 identity=45.1 coverage=76.66666666666667)
seg (db=Seg db_id=seg from=72 to=84)
spore_ytfJ: sporulation protein YtfJ (db=HMMTigr db_id=TIGR02874 from=12 to=133 evalue=2.3e-65 interpro_id=IPR014229 interpro_description=Sporulation protein YtfJ)
Displaying items 1-30 of 68 in total

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