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AR_MS4_05142019_scaffold_9272

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_9272_1

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comp(1..189)
DNA (189bp) protein (63aa)
Resolvase domain protein n=4 Tax=mine drainage metagenome RepID=T1CZP4_9ZZZZ
Resolvase domain protein {ECO:0000313|EMBL:EQD74789.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
resolvase-like protein
AR_MS4_05142019_scaffold_9272_2
unknown

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comp(208..321)
DNA (114bp) protein (38aa)

This feature has no annotations

AR_MS4_05142019_scaffold_9272_3
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(429..1151)
DNA (723bp) protein (241aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000371515B
hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
AR_MS4_05142019_scaffold_9272_4
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(1148..1762)
DNA (615bp) protein (205aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037AFD24
hisH; glutamine amidotransferase
AR_MS4_05142019_scaffold_9272_5
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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1892..2710
DNA (819bp) protein (273aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036AD46D
dapF; diaminopimelate epimerase
AR_MS4_05142019_scaffold_9272_6
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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2707..3591
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003786ED3
dapA; dihydrodipicolinate synthase/N-acetylneuraminate lyase
AR_MS4_05142019_scaffold_9272_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3617..4414
DNA (798bp) protein (266aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
dihydrodipicolinate reductase (EC:1.3.1.26)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036DE6E7
AR_MS4_05142019_scaffold_9272_8
unknown

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4441..5094
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036B5CCA
AR_MS4_05142019_scaffold_9272_9
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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5232..5792
DNA (561bp) protein (187aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003631C82
ubiX; 3-polyprenyl-4-hydroxybenzoate decarboxylase
AR_MS4_05142019_scaffold_9272_10
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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5789..6652
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003758053
ubiA; 4-hydroxybenzoate polyprenyltransferase
4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:ACD83971.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_9272_11
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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6643..7788
DNA (1146bp) protein (382aa)
Aminodeoxyfutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993}; Short=AFL synthase {ECO:0000256|HAMAP-Rule:MF_00993};; Short=Aminofutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993};; EC=2.5.1.120 {ECO:0000256|HAMAP-Rule:MF_00993};; Menaquinone biosynthetic enzyme MqnE {ECO:0000256|HAMAP-Rule:MF_00993}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003611EC9
thiH; thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme
AR_MS4_05142019_scaffold_9272_12
unknown

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7876..7959
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 12 items

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