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AR_MS4_05142019_scaffold_3360

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_3360_1
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(92..823)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000370A3CA
ISChy9, transposase orfA
ISChy9, transposase orfA {ECO:0000313|EMBL:ABB14389.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
AR_MS4_05142019_scaffold_3360_2
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1076..2494
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035E98A2
glutamine synthetase
Glutamine synthetase, type III {ECO:0000313|EMBL:ACL74154.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
AR_MS4_05142019_scaffold_3360_3
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

2478..3647
DNA (1170bp) protein (390aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000366FBF1
hisC; Histidinol-phosphate/aromatic aminotransferase
AR_MS4_05142019_scaffold_3360_4
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

3644..5425
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003799951
Uncharacterized protein {ECO:0000313|EMBL:KIE59149.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein
AR_MS4_05142019_scaffold_3360_5
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(5464..6876)
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003606C99
cusS; Signal transduction histidine kinase, contains HAMP domain
AR_MS4_05142019_scaffold_3360_6
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(6873..7547)
DNA (675bp) protein (225aa)
PhoB family transcriptional regulator n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037195DA
DNA binding copper response regulator {ECO:0000313|EMBL:CCG92723.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
ompR; DNA-binding response regulator, OmpR family (REC-wHTH domains)
AR_MS4_05142019_scaffold_3360_7
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(7624..8181)
DNA (558bp) protein (186aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037869DA
lipoprotein signal peptidase
AR_MS4_05142019_scaffold_3360_8
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(8178..8567)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037EE0A8
Uncharacterized protein {ECO:0000313|EMBL:KIE58556.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein
AR_MS4_05142019_scaffold_3360_9
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(8560..9660)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036587B3
dnaN; DNA polymerase sliding clamp subunit
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
AR_MS4_05142019_scaffold_3360_10
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(9874..11247)
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037E1FC9
dnaA; Chromosomal replication initiator protein dnaA, ATPase
Chromosomal replication initiator protein DnaA {ECO:0000255|HAMAP-Rule:MF_00377}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_3360_11
unknown

Not on your lists

comp(11374..11679)
DNA (306bp) protein (102aa)

This feature has no annotations

AR_MS4_05142019_scaffold_3360_12
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(11740..12657)
DNA (918bp) protein (306aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003801C3A
aroE; Shikimate 5-dehydrogenase
AR_MS4_05142019_scaffold_3360_13
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

12840..13700
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035F101B
cysE; Serine acetyltransferase
Serine acetyltransferase {ECO:0000313|EMBL:ACD84531.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_3360_14
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

13697..14833
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000360FE6C
Cysteine sulfinate desulfinase {ECO:0000313|EMBL:KIE58554.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
nifS; cysteine sulfinate desulfinase/cysteine desulfurase
AR_MS4_05142019_scaffold_3360_15
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(14830..15900)
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003729834
nucleoside-diphosphate-sugar epimerase
Predicted nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ACD84529.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_3360_16
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

16006..16626
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00038179B6
Uncharacterized protein {ECO:0000313|EMBL:KIE58552.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein
AR_MS4_05142019_scaffold_3360_17
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

16886..17998
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036A3BAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD84525.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_3360_18
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(18044..18592)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035DA5A9
Predicted metal-sulfur cluster biosynthetic enzyme {ECO:0000313|EMBL:CCG93288.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
paaD; metal-sulfur cluster biosynthetic enzyme
AR_MS4_05142019_scaffold_3360_19
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(18771..19961)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000381FE4D
Cysteine desulfurase activator SufB {ECO:0000313|EMBL:CCG93287.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
sufB; cysteine desulfurase activator SufB
Displaying 19 items

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