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AR_MS4_05142019_scaffold_5063

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_5063_1
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..426
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035F476B
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACI51203.1}; Peroxiredoxin protein {ECO:0000313|EMBL:CAP54519.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
AR_MS4_05142019_scaffold_5063_2
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(508..2004)
DNA (1497bp) protein (499aa)
preprotein translocase subunit SecY n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003789B1E
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_3
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(2176..2619)
DNA (444bp) protein (148aa)
50S ribosomal protein L15 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036E9878
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_4
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(2616..3350)
DNA (735bp) protein (245aa)
30S ribosomal protein S5 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035C1EC5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
rpsE; 30S ribosomal protein S5
AR_MS4_05142019_scaffold_5063_5
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(3392..3745)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037DD164
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_6
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(3797..4339)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036846B1
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_7
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(4378..4764)
DNA (387bp) protein (129aa)
30S ribosomal protein S8 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003653358
rpsH; ribosomal protein S8
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_8
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(4779..4964)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000364D920
rpsN; ribosomal protein S14
Ribosomal protein S14 {ECO:0000313|EMBL:ACD82751.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_9
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(4991..5569)
DNA (579bp) protein (193aa)
50S ribosomal protein L5 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003801D27
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_10
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(5566..5892)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036379DC
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
rplX; 50S ribosomal protein L24
AR_MS4_05142019_scaffold_5063_11
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(5889..6254)
DNA (366bp) protein (122aa)
50S ribosomal protein L14 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035C26B8
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
rplN; 50S ribosomal protein L14
AR_MS4_05142019_scaffold_5063_12
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists


comp(6251..6640)
DNA (390bp) protein (130aa)
30S ribosomal protein S17 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036ECF80
SSU ribosomal protein S17P
Tax=RBG_13_Chloroflexi_54_9_curated
AR_MS4_05142019_scaffold_5063_13
Clostridium sp. CAG:710, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6637..6873)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000362B12D
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1262833 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:710.;"
50S ribosomal protein L29
AR_MS4_05142019_scaffold_5063_14
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(6870..7295)
DNA (426bp) protein (142aa)
50S ribosomal protein L16 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003735085
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000255|HAMAP-Rule:MF_01342}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_15
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(7311..7958)
DNA (648bp) protein (216aa)
30S ribosomal protein S3 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035F83A2
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_16
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(7968..8318)
DNA (351bp) protein (117aa)
50S ribosomal protein L22 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036CCFC0
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
rplV; 50S ribosomal protein L22
AR_MS4_05142019_scaffold_5063_17
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(8364..8645)
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=RS19_METI4
rpsS; ribosomal protein S19
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_18
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(8658..9506)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003801C74
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
rplB; 50S ribosomal protein L2
AR_MS4_05142019_scaffold_5063_19
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(9522..9809)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035EB235
rplW; ribosomal protein L23
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
AR_MS4_05142019_scaffold_5063_20
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(9806..10429)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000376051A
rplD; ribosomal protein L4
50S ribosomal protein L4 {ECO:0000255|HAMAP-Rule:MF_01328}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_5063_21
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(10454..11176)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037857F8
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
rplC; ribosomal protein L3
AR_MS4_05142019_scaffold_5063_22
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(11215..11523)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035C1076
rpsJ; ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
AR_MS4_05142019_scaffold_5063_23
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(11538..12074)
DNA (537bp) protein (179aa)
elongation factor P n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035F0319
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
fusA; translation elongation factor G, GTPase
Displaying 23 items

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