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AR_MS4_05142019_scaffold_2657

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_2657_1
Coraliomargarita sp. CAG:312, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

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comp(3..206)
DNA (204bp) protein (68aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1262865 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita; environmental samples.;" source="Coraliomargarita sp. CAG:312.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003612752
methionyl-tRNA synthetase
AR_MS4_05142019_scaffold_2657_2
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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528..863
DNA (336bp) protein (112aa)
DNA-binding protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036B1F5E
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:CCG93372.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
himA; nucleoid DNA-binding protein
AR_MS4_05142019_scaffold_2657_3
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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919..2199
DNA (1281bp) protein (427aa)
Histidine--tRNA ligase {ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|SAAS:SAAS00043629};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00038033F8
hisS; Histidyl-tRNA synthetase
AR_MS4_05142019_scaffold_2657_4
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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2196..3980
DNA (1785bp) protein (595aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00038259C2
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:KIE58610.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
aspS; Aspartyl-tRNA synthetase
AR_MS4_05142019_scaffold_2657_5
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

3977..5497
DNA (1521bp) protein (507aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000363F63B
pykF; Pyruvate kinase
AR_MS4_05142019_scaffold_2657_6
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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5509..6384
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000377C183
dltE; Short-chain dehydrogenase
Short-chain dehydrogenase {ECO:0000313|EMBL:KIE58612.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
AR_MS4_05142019_scaffold_2657_7
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

6368..6937
DNA (570bp) protein (190aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146, ECO:0000256|SAAS:SAAS00054741}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146, ECO:0000256|SAAS:SAAS00054755};; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
deoxycytidine triphosphate deaminase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035DA846
dcd; deoxycytidine triphosphate deaminase
AR_MS4_05142019_scaffold_2657_8
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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6976..8025
DNA (1050bp) protein (350aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849, ECO:0000256|SAAS:SAAS00181424};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003738077
radical SAM enzyme, Cfr family
AR_MS4_05142019_scaffold_2657_9
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

8057..8686
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000370DDD7
Uncharacterized protein {ECO:0000313|EMBL:KIE58937.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein
AR_MS4_05142019_scaffold_2657_10
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

8739..9065
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000360818F
Particulate methane monooxygenase {ECO:0000313|EMBL:KIE58940.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein
AR_MS4_05142019_scaffold_2657_11
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(9114..9656)
DNA (543bp) protein (181aa)
Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
adenine phosphoribosyltransferase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003644473
apt; adenine/guanine phosphoribosyltransferase
AR_MS4_05142019_scaffold_2657_12
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(9653..10489)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036028EF
rpoD; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
AR_MS4_05142019_scaffold_2657_13
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(10700..11665)
DNA (966bp) protein (322aa)
cysteine synthase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035F8DA5
Cysteine synthase {ECO:0000313|EMBL:KIE58982.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
cysK; cysteine synthase
AR_MS4_05142019_scaffold_2657_14
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

11725..12789
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000378B33E
rfaF; ADP-heptose:LPS heptosyltransferase
ADP-heptose:LPS heptosyltransferase {ECO:0000313|EMBL:ACD82290.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2657_15
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

12841..13686
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003623C5D
Uncharacterized protein {ECO:0000313|EMBL:KIE58985.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein
AR_MS4_05142019_scaffold_2657_16
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

13754..14890
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035CFF58
Ligand-gated ion channel, periplasmic domain {ECO:0000313|EMBL:CCG91352.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hisJ; Ligand-gated ion channel, periplasmic domain
AR_MS4_05142019_scaffold_2657_17
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(14933..15259)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003828FA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD82293.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2657_18
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

15470..18655
DNA (3186bp) protein (1062aa)
multidrug transporter n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037CE00C
Multidrug transporter {ECO:0000313|EMBL:KIE58988.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
acrB; Cation/multidrug efflux pump
Displaying 18 items

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