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AR_MS4_05142019_scaffold_888

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_888_1
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(94..363)
DNA (270bp) protein (90aa)
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
AR_MS4_05142019_scaffold_888_2
unknown

Not on your lists

952..1422
DNA (471bp) protein (157aa)

This feature has no annotations

AR_MS4_05142019_scaffold_888_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1869..3047
DNA (1179bp) protein (393aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCR0_9BACT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EEF62256.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
major facilitator superfamily protein
AR_MS4_05142019_scaffold_888_4
unknown

Not on your lists

3008..3133
DNA (126bp) protein (42aa)

This feature has no annotations

AR_MS4_05142019_scaffold_888_5
Synechococcus sp. PCC 7335, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3287..8947
DNA (5661bp) protein (1887aa)
Bacterial pre-peptidase C-terminal domain family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WVE9_9SYNE
Bacterial pre-peptidase C-terminal domain family {ECO:0000313|EMBL:EDX82789.1}; TaxID=91464 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7335.;"
PA-phosphatase-like phosphoesterase
AR_MS4_05142019_scaffold_888_6
unknown

Not on your lists

comp(8928..9578)
DNA (651bp) protein (217aa)

This feature has no annotations

AR_MS4_05142019_scaffold_888_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10135..10890)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQD7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57961.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
AR_MS4_05142019_scaffold_888_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11608..12993)
DNA (1386bp) protein (462aa)
Peptidase M20 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSF0_9BACT
Peptidase M20 {ECO:0000313|EMBL:EEF57215.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidase M20
AR_MS4_05142019_scaffold_888_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13039..16566)
DNA (3528bp) protein (1176aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSE9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57214.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
AsmA family protein
AR_MS4_05142019_scaffold_888_10
Sulfurihydrogenibium azorense, Sulfurihydrogenibium, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(16586..17005)
DNA (420bp) protein (140aa)
rfaD; ADP-glyceromanno-heptose 6-epimerase (EC:5.1.3.20)
ADP-L-glycero-D-manno-heptose-6-epimerase {ECO:0000256|SAAS:SAAS00055252}; EC=5.1.3.20 {ECO:0000256|SAAS:SAAS00055236};; TaxID=204536 species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Sulfurihydrogenibium.;" source="Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825).;"
ADP-glyceromanno-heptose 6-epimerase n=1 Tax=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) RepID=C1DTH7_SULAA
AR_MS4_05142019_scaffold_888_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(17048..17515)
DNA (468bp) protein (156aa)
ADP-L-glycero-D-manno-heptose-6-epimerase {ECO:0000256|SAAS:SAAS00055252, ECO:0000313|EMBL:CBE70016.1}; EC=5.1.3.20 {ECO:0000256|SAAS:SAAS00055236};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
ADP-L-glycero-D-manno-heptose-6-epimerase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLV9_9BACT
ADP-L-glycero-D-manno-heptose-6-epimerase
AR_MS4_05142019_scaffold_888_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(17582..18529)
DNA (948bp) protein (316aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ39_9BACT
AR_MS4_05142019_scaffold_888_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(18535..19422)
DNA (888bp) protein (296aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW5_9BACT
prolipoprotein diacylglyceryl transferase
AR_MS4_05142019_scaffold_888_14
unknown

Not on your lists

19779..20084
DNA (306bp) protein (102aa)

This feature has no annotations

AR_MS4_05142019_scaffold_888_15
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

20144..20731
DNA (588bp) protein (196aa)
Tax=BJP_IG2102_BRC1_58_13
AR_MS4_05142019_scaffold_888_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21265..22590)
DNA (1326bp) protein (442aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHF6_9BACT
AR_MS4_05142019_scaffold_888_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(22825..25251)
DNA (2427bp) protein (809aa)
Permease n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYP0_OPITP
permease
Permease {ECO:0000313|EMBL:ACB75276.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_888_18
unknown

Not on your lists

comp(25535..25903)
DNA (369bp) protein (123aa)

This feature has no annotations

AR_MS4_05142019_scaffold_888_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26110..27114)
DNA (1005bp) protein (335aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNS7_9BACT
aspartate-semialdehyde dehydrogenase
AR_MS4_05142019_scaffold_888_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

27640..28923
DNA (1284bp) protein (428aa)
GTPase HflX n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW1_9BACT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hflX; GTP-binding protein protease modulator
AR_MS4_05142019_scaffold_888_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(28910..30097)
DNA (1188bp) protein (396aa)
A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific adenine glycosylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP7_9BACT
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EEF61411.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
AR_MS4_05142019_scaffold_888_22
RBG_13_Chloroflexi_46_9_curated, Chloroflexi, Bacteria

Not on your lists

30321..30932
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A003_METMM
hypothetical protein
Tax=RBG_13_Chloroflexi_46_9_curated
AR_MS4_05142019_scaffold_888_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31033..32577)
DNA (1545bp) protein (515aa)
Putative RNA polymerase, sigma 70 family subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC37_9BACT
Putative RNA polymerase, sigma 70 family subunit {ECO:0000313|EMBL:EEF62505.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
AR_MS4_05142019_scaffold_888_24
Nonlabens ulvanivorans, Nonlabens, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32888..33547
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I4B5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:GAK77959.1}; TaxID=906888 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens ulvanivorans.;"
AR_MS4_05142019_scaffold_888_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33569..35284)
DNA (1716bp) protein (572aa)
Parallel beta-helix repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHM6_9BACT
Parallel beta-helix repeat protein {ECO:0000313|EMBL:EEF60604.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
parallel beta-helix repeat-containing protein
AR_MS4_05142019_scaffold_888_26
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35404..37131)
DNA (1728bp) protein (576aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000364757B
Uncharacterized protein {ECO:0000313|EMBL:EYF07384.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
Displaying 26 items

View Taxonomy