ggKbase home page

BD02T64_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 1061 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_12_1
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

318..863
DNA (546bp) protein (182aa)
Putative transcription regulator protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6Q2_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KEJ93812.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter p
hypothetical protein
BD02T64_scaffold_12_2
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

879..1511
DNA (633bp) protein (211aa)
Glutathione S-transferase III n=1 Tax=Roseovarius sp. 217 RepID=A3W6Q1_9RHOB rbh
Glutathione S-transferase {ECO:0000313|EMBL:KEJ93813.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter
putative maleylacetoacetate isomerase
BD02T64_scaffold_12_3
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1531..1989
DNA (459bp) protein (153aa)
Putative aldehyde dehydrogenase subunit protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6Q0_9RHOB
Isoquinoline 1-oxidoreductase {ECO:0000313|EMBL:KEJ93814.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitoba
aerobic carbon monoxide dehydrogenase
BD02T64_scaffold_12_4
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1991..4165
DNA (2175bp) protein (725aa)
Probable oxidoreductase n=1 Tax=Roseovarius sp. 217 RepID=A3W6P9_9RHOB
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KEJ93815.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter
aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding
BD02T64_scaffold_12_5

Not on your lists

comp(5287..6207)
DNA (921bp) protein (307aa)
Metallo-beta-lactamase family protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SYE8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN90174.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Zn-dependent hydrolase
BD02T64_scaffold_12_6
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6314..7606
DNA (1293bp) protein (431aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae;
Sensor histidine kinase, putative n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FRB3_9RHOB rbh
histidine kinase
BD02T64_scaffold_12_7
Roseobacter sp. SK209-2-6, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7967..9034
DNA (1068bp) protein (356aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synth
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EQR4_9RHOB
phosphoribosylformylglycinamidine cyclo-ligase
BD02T64_scaffold_12_8
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9031..9624
DNA (594bp) protein (198aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_019
Phosphoribosylglycinamide formyltransferase n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F5M0H8_RHOSH rbh
phosphoribosylglycinamide formyltransferase
BD02T64_scaffold_12_9
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9661..10920
DNA (1260bp) protein (420aa)
rnd; ribonuclease D (EC:3.1.26.3)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=375451 species="Bacteria; Proteobacteria; Alph
Ribonuclease D n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q167K2_ROSDO
BD02T64_scaffold_12_10
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11023..11538)
DNA (516bp) protein (172aa)
Lipoprotein, putative n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SN27_9RHOB
Putative Lipoprotein {ECO:0000313|EMBL:KHQ54176.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTA
BD02T64_scaffold_12_11
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11801..12211
DNA (411bp) protein (137aa)
Cysteine desulfuration protein SufE n=2 Tax=Ruegeria RepID=C9CXE3_9RHOB rbh
Cysteine desufuration protein SufE {ECO:0000313|EMBL:KJZ25284.1}; TaxID=379347 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria m
cysteine desulfuration protein sufE-like protein
BD02T64_scaffold_12_12
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12216..12932)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K6I0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EBA07330.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E
hypothetical protein
BD02T64_scaffold_12_13
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13029..13730)
DNA (702bp) protein (234aa)
methionine synthase (EC:2.1.1.13)
Corrinoid methyltransferase protein, putative n=1 Tax=Sagittula stellata E-37 RepID=A3K6H8_9RHOB rbh
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:KEO56555.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thiocla
BD02T64_scaffold_12_14
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13885..15111
DNA (1227bp) protein (409aa)
UPI0003D1A89C related cluster n=1 Tax=unknown RepID=UPI0003D1A89C rbh
Contig5, whole genome shotgun sequence {ECO:0000313|EMBL:ETA54017.2}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteracea
radical SAM domain protein
BD02T64_scaffold_12_15
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15143..16162)
DNA (1020bp) protein (340aa)
metH3; methionine synthase subunit A (EC:2.1.1.13)
Homocysteine S-methyltransferase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FS57_9RHOB rbh
Homocysteine S-methyltransferase {ECO:0000313|EMBL:EDM71023.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobact
BD02T64_scaffold_12_16
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16251..18215)
DNA (1965bp) protein (655aa)
hypothetical protein n=1 Tax=Oceanicola sp. S124 RepID=UPI00025585CC rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EEB83746.1}; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobact
hypothetical protein rbh
BD02T64_scaffold_12_17
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18463..18777)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LS82_RUEPO rbh
hypothetical protein
Tax=BJP_08E140C01_Roseovarius_63_250
BD02T64_scaffold_12_18
Ruegeria sp. R11, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18939..19700
DNA (762bp) protein (254aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};;
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase PurC (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Ruegeria sp. R11 RepID=B7QTR5_9RHOB rbh
BD02T64_scaffold_12_19
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19764..19994
DNA (231bp) protein (77aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formyl
phosphoribosylformylglycinamidine synthase n=1 Tax=Oceanicola sp. S124 RepID=UPI00025585C9 rbh
phosphoribosylformylglycinamidine synthase, PurS protein
BD02T64_scaffold_12_20
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19994..20662
DNA (669bp) protein (223aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:000025
phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Roseobacter sp. GAI101 RepID=B7RQC8_9RHOB
BD02T64_scaffold_12_21
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20751..22469
DNA (1719bp) protein (573aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae;
C4-dicarboxylate transport sensor protein DctB, putative n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FS52_9RHOB rbh
C4-dicarboxylate transport sensor protein DctB, putative
BD02T64_scaffold_12_22
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22476..23810
DNA (1335bp) protein (445aa)
Fis family transcriptional regulator n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0003013F19
Fis family transcriptional regulator {ECO:0000313|EMBL:KID10291.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisi
Fis family transcriptional regulator
BD02T64_scaffold_12_23
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23888..25099)
DNA (1212bp) protein (404aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VL94_9RHOB rbh
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:KGM48980.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oc
glycerophosphoryl diester phosphodiesterase family protein
BD02T64_scaffold_12_24
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25668..28592
DNA (2925bp) protein (975aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=391624 species="Bacteria; Proteobacteria; Alp
ribonuclease, Rne/Rng family (EC:3.4.24.-)
Ribonuclease E n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9E573_9RHOB rbh
BD02T64_scaffold_12_25
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28752..28982)
DNA (231bp) protein (77aa)
preprotein translocase subunit TatB n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557E66 rbh
SirA family protein
SirA family protein {ECO:0000313|EMBL:ABV94075.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter sh
BD02T64_scaffold_12_26
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29117..29827
DNA (711bp) protein (237aa)
Putative cytochrome c-type biogenesis protein CcdA n=1 Tax=Roseovarius sp. TM1035 RepID=A6DZP2_9RHOB rbh
ccdA; putative cytochrome c-type biogenesis protein CcdA
Tax=BJP_08E140C01_Roseovarius_63_250
BD02T64_scaffold_12_27
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29881..31167
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CDE4_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KAJ04700.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter med
hypothetical protein rbh
BD02T64_scaffold_12_28
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31164..32546
DNA (1383bp) protein (461aa)
Cytochrome P450 family protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FS46_9RHOB rbh
cytochrome P450 family protein
Tax=BJP_08E140C01_Roseovarius_63_250
BD02T64_scaffold_12_29
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32530..32760)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LRP0_DINSH rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV94071.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacte
BD02T64_scaffold_12_30
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32757..32951)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LS65_RUEPO
Uncharacterized protein {ECO:0000313|EMBL:KCV81799.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium a
hypothetical protein
Displaying items 1-30 of 1061 in total

View Taxonomy