name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
BD02T64_scaffold_179_61
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(50047..52392)
----------------- DNA (2346bp) protein (782aa) |
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XM0_COLP3
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BD02T64_scaffold_179_62
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(52546..53823)
----------------- DNA (1278bp) protein (426aa) |
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=CLPX_COLP3
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;"
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BD02T64_scaffold_179_63
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(53956..54603)
----------------- DNA (648bp) protein (216aa) |
clpP; ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000255|HAMAP-Rule:MF_00444}; EC=3.4.21.92 {ECO:0000255|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000255|HAMAP-Rule:MF_00444}; TaxID=167879 spe
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=CLPP_COLP3
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BD02T64_scaffold_179_64
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(54747..56054)
----------------- DNA (1308bp) protein (436aa) |
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
tig; trigger factor (EC:5.2.1.8)
trigger factor n=1 Tax=Colwellia piezophila RepID=UPI000368861C
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BD02T64_scaffold_179_65
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
57121..57975
----------------- DNA (855bp) protein (285aa) |
methenyltetrahydrofolate cyclohydrolase n=1 Tax=Colwellia piezophila RepID=UPI00036FF56F
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrer
folD2; FolD bifunctional protein
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BD02T64_scaffold_179_66
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(58040..59446)
----------------- DNA (1407bp) protein (469aa) |
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=SYC_COLP3
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BD02T64_scaffold_179_67
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
59596..60087
----------------- DNA (492bp) protein (164aa) |
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; C
ppiB; peptidyl-prolyl cis-trans isomerase B (EC:5.2.1.8)
peptidyl-prolyl cis-trans isomerase n=1 Tax=Colwellia piezophila RepID=UPI000371F951
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BD02T64_scaffold_179_68
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
60080..60850
----------------- DNA (771bp) protein (257aa) |
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylgluco
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-)
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XL3_COLP3
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BD02T64_scaffold_179_69
Pseudoalteromonas citrea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(60855..61493)
----------------- DNA (639bp) protein (213aa) |
tRNA-(MS[2]IO[6]A)-hydroxylase n=1 Tax=Pseudoalteromonas citrea NCIMB 1889 RepID=U1JJL1_9GAMM
tRNA-(MS[2]IO[6]A)-hydroxylase {ECO:0000313|EMBL:ERG17182.1}; TaxID=1117314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source
tRNA-(MS[2]IO[6]A)-hydroxylase
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BD02T64_scaffold_179_70
Psychrobacter aquaticus, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
61907..62107
----------------- DNA (201bp) protein (67aa) |
hypothetical protein n=1 Tax=Klebsiella oxytoca RepID=UPI0003767E03
rbh
Uncharacterized protein {ECO:0000313|EMBL:ERL56078.1}; TaxID=1354303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter aqua
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BD02T64_scaffold_179_71
unknown
|
Not on your lists |
62444..64300
----------------- DNA (1857bp) protein (619aa) |
This feature has no annotations |
|
BD02T64_scaffold_179_72
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(64423..65187)
----------------- DNA (765bp) protein (255aa) |
tRNA-(MS[2]IO[6]A)-hydroxylase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XL2_COLP3
tRNA-hydroxylase {ECO:0000313|EMBL:KGJ96360.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (Vibr
miaE; tRNA-(MS[2]IO[6]A)-hydroxylase
|
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BD02T64_scaffold_179_73
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
65765..67417
----------------- DNA (1653bp) protein (551aa) |
Uncharacterized protein n=1 Tax=Helicobacter cinaedi (strain PAGU611) RepID=I2F9R2_HELCP
rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH69021.1}; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spongiibacter s
hypothetical protein
|
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BD02T64_scaffold_179_74
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(67523..70465)
----------------- DNA (2943bp) protein (981aa) |
hsdR; type I site-specific deoxyribonuclease HsdR (EC:3.1.21.3)
HsdR: type I site-specific deoxyribonuclease {ECO:0000313|EMBL:CCK78188.1}; EC=3.1.21.3 {ECO:0000313|EMBL:CCK78188.1};; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobact
HsdR: type I site-specific deoxyribonuclease n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NEZ6_DESTT
rbh
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BD02T64_scaffold_179_75
Sulfurovum sp. FS08-3, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(70487..71788)
----------------- DNA (1302bp) protein (434aa) |
Type I restriction modification DNA specificity domain protein n=1 Tax=Neisseria flavescens NRL30031/H210 PF1_NEIFL">RepID=C0EPF1_NEIFL
Uncharacterized protein {ECO:0000313|EMBL:KIM13250.1}; TaxID=1539065 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. FS08-3.;"
type I restriction-modification system (methylase_S)
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BD02T64_scaffold_179_76
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(71790..73856)
----------------- DNA (2067bp) protein (689aa) |
N-6 adenine-specific DNA methylase n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NBW7_DESTT
rbh
N-6 adenine-specific DNA methylase
N-6 adenine-specific DNA methylase {ECO:0000313|EMBL:CCK78186.1}; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" source="D
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BD02T64_scaffold_179_77
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(73950..74117)
----------------- DNA (168bp) protein (56aa) |
Uncharacterized protein n=1 Tax=Glaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064) RepID=G4QL02_GLANF
excisionase
Excisionase {ECO:0000313|EMBL:AHK15130.1}; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-15.;"
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BD02T64_scaffold_179_78
Vibrio sinaloensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(74250..74789)
----------------- DNA (540bp) protein (180aa) |
DNA invertase n=1 Tax=Vibrio crassostreae RepID=UPI00031CF7E1
rbh
Resolvase {ECO:0000313|EMBL:KGY10350.1}; TaxID=379097 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sinaloensis.;"
DNA invertase
|
these give rise to (flagellin) phase variation
Jill Banfield
(7/26/16)
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BD02T64_scaffold_179_79
unknown
|
Not on your lists |
comp(75127..75810)
----------------- DNA (684bp) protein (228aa) |
This feature has no annotations |
|
BD02T64_scaffold_179_80
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(75954..76964)
----------------- DNA (1011bp) protein (337aa) |
hypothetical protein n=1 Tax=Vibrio crassostreae RepID=UPI00030A7FCC
rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI60739.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eut
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BD02T64_scaffold_179_81
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(77297..78553)
----------------- DNA (1257bp) protein (419aa) |
DNA-directed DNA polymerase {ECO:0000313|EMBL:KGJ98068.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KGJ98068.1};; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliace
XRE family transcriptional regulator n=1 Tax=Colwellia piezophila RepID=UPI00037B5E0B
umuC1; umuC protein
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BD02T64_scaffold_179_82
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(78541..78954)
----------------- DNA (414bp) protein (138aa) |
umuD2; umuD protein (EC:3.4.21.-)
UmuD protein {ECO:0000313|EMBL:AAZ25664.1}; EC=3.4.21.- {ECO:0000313|EMBL:AAZ25664.1};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;
UmuD protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q480X2_COLP3
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BD02T64_scaffold_179_83
unknown
|
Not on your lists |
comp(79090..79515)
----------------- DNA (426bp) protein (142aa) |
This feature has no annotations |
|
BD02T64_scaffold_179_84
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(79824..81821)
----------------- DNA (1998bp) protein (666aa) |
Putative protease n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q484H5_COLP3
rbh
protease
rbh
Putative protease {ECO:0000313|EMBL:AAZ28155.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (st
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BD02T64_scaffold_179_85
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(81962..82312)
----------------- DNA (351bp) protein (117aa) |
Putative lipoprotein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q484H7_COLP3
rbh
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AAZ25898.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea
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BD02T64_scaffold_179_86
unknown
|
Not on your lists |
comp(82320..82697)
----------------- DNA (378bp) protein (126aa) |
This feature has no annotations |
|
BD02T64_scaffold_179_87
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(82748..83572)
----------------- DNA (825bp) protein (275aa) |
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q484H8_COLP3
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ24132.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
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BD02T64_scaffold_179_88
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(84137..86947)
----------------- DNA (2811bp) protein (937aa) |
hypothetical protein n=1 Tax=Vibrio cyclitrophicus RepID=UPI00030EA204
rbh
Uncharacterized protein {ECO:0000313|EMBL:KGE66331.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluor
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BD02T64_scaffold_179_89
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
87396..88451
----------------- DNA (1056bp) protein (352aa) |
hypothetical protein n=1 Tax=Vibrio cyclitrophicus RepID=UPI00031BC019
rbh
Uncharacterized protein {ECO:0000313|EMBL:KGK42809.1}; TaxID=1545442 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. A-D6.;"
hypothetical protein
rbh
|
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BD02T64_scaffold_179_90
Shewanella sp. MR-7, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(88622..91480)
----------------- DNA (2859bp) protein (953aa) |
Serine/threonine protein kinase n=1 Tax=Shewanella sp. (strain MR-7) RepID=Q0HW84_SHESR
rbh
serine/threonine protein kinase
rbh
Serine/threonine protein kinase {ECO:0000313|EMBL:ABI42621.1}; TaxID=60481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp.
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