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BD02T64_scaffold_179

Search features with annotation key words

Displaying items 61-90 of 139 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_179_61
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50047..52392)
-----------------
DNA (2346bp)
protein (782aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XM0_COLP3
BD02T64_scaffold_179_62
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52546..53823)
-----------------
DNA (1278bp)
protein (426aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=CLPX_COLP3
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;"
BD02T64_scaffold_179_63
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53956..54603)
-----------------
DNA (648bp)
protein (216aa)
clpP; ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000255|HAMAP-Rule:MF_00444}; EC=3.4.21.92 {ECO:0000255|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000255|HAMAP-Rule:MF_00444}; TaxID=167879 spe
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=CLPP_COLP3
BD02T64_scaffold_179_64
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54747..56054)
-----------------
DNA (1308bp)
protein (436aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
tig; trigger factor (EC:5.2.1.8)
trigger factor n=1 Tax=Colwellia piezophila RepID=UPI000368861C
BD02T64_scaffold_179_65
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57121..57975
-----------------
DNA (855bp)
protein (285aa)
methenyltetrahydrofolate cyclohydrolase n=1 Tax=Colwellia piezophila RepID=UPI00036FF56F
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrer
folD2; FolD bifunctional protein
BD02T64_scaffold_179_66
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58040..59446)
-----------------
DNA (1407bp)
protein (469aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=SYC_COLP3
BD02T64_scaffold_179_67
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59596..60087
-----------------
DNA (492bp)
protein (164aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; C
ppiB; peptidyl-prolyl cis-trans isomerase B (EC:5.2.1.8)
peptidyl-prolyl cis-trans isomerase n=1 Tax=Colwellia piezophila RepID=UPI000371F951
BD02T64_scaffold_179_68
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60080..60850
-----------------
DNA (771bp)
protein (257aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylgluco
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-)
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XL3_COLP3
BD02T64_scaffold_179_69
Pseudoalteromonas citrea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(60855..61493)
-----------------
DNA (639bp)
protein (213aa)
tRNA-(MS[2]IO[6]A)-hydroxylase n=1 Tax=Pseudoalteromonas citrea NCIMB 1889 RepID=U1JJL1_9GAMM
tRNA-(MS[2]IO[6]A)-hydroxylase {ECO:0000313|EMBL:ERG17182.1}; TaxID=1117314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source
tRNA-(MS[2]IO[6]A)-hydroxylase
BD02T64_scaffold_179_70
Psychrobacter aquaticus, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61907..62107
-----------------
DNA (201bp)
protein (67aa)
hypothetical protein n=1 Tax=Klebsiella oxytoca RepID=UPI0003767E03 rbh
Uncharacterized protein {ECO:0000313|EMBL:ERL56078.1}; TaxID=1354303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter aqua
BD02T64_scaffold_179_71
unknown

Not on your lists

62444..64300
-----------------
DNA (1857bp)
protein (619aa)

This feature has no annotations

BD02T64_scaffold_179_72
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64423..65187)
-----------------
DNA (765bp)
protein (255aa)
tRNA-(MS[2]IO[6]A)-hydroxylase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XL2_COLP3
tRNA-hydroxylase {ECO:0000313|EMBL:KGJ96360.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (Vibr
miaE; tRNA-(MS[2]IO[6]A)-hydroxylase
BD02T64_scaffold_179_73
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65765..67417
-----------------
DNA (1653bp)
protein (551aa)
Uncharacterized protein n=1 Tax=Helicobacter cinaedi (strain PAGU611) RepID=I2F9R2_HELCP rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH69021.1}; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spongiibacter s
hypothetical protein
BD02T64_scaffold_179_74
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67523..70465)
-----------------
DNA (2943bp)
protein (981aa)
hsdR; type I site-specific deoxyribonuclease HsdR (EC:3.1.21.3)
HsdR: type I site-specific deoxyribonuclease {ECO:0000313|EMBL:CCK78188.1}; EC=3.1.21.3 {ECO:0000313|EMBL:CCK78188.1};; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobact
HsdR: type I site-specific deoxyribonuclease n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NEZ6_DESTT rbh
BD02T64_scaffold_179_75
Sulfurovum sp. FS08-3, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70487..71788)
-----------------
DNA (1302bp)
protein (434aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Neisseria flavescens NRL30031/H210 PF1_NEIFL">RepID=C0EPF1_NEIFL
Uncharacterized protein {ECO:0000313|EMBL:KIM13250.1}; TaxID=1539065 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. FS08-3.;"
type I restriction-modification system (methylase_S)
BD02T64_scaffold_179_76
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71790..73856)
-----------------
DNA (2067bp)
protein (689aa)
N-6 adenine-specific DNA methylase n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NBW7_DESTT rbh
N-6 adenine-specific DNA methylase
N-6 adenine-specific DNA methylase {ECO:0000313|EMBL:CCK78186.1}; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" source="D
BD02T64_scaffold_179_77
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73950..74117)
-----------------
DNA (168bp)
protein (56aa)
Uncharacterized protein n=1 Tax=Glaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064) RepID=G4QL02_GLANF
excisionase
Excisionase {ECO:0000313|EMBL:AHK15130.1}; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-15.;"
BD02T64_scaffold_179_78
Vibrio sinaloensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74250..74789)
-----------------
DNA (540bp)
protein (180aa)
DNA invertase n=1 Tax=Vibrio crassostreae RepID=UPI00031CF7E1 rbh
Resolvase {ECO:0000313|EMBL:KGY10350.1}; TaxID=379097 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sinaloensis.;"
DNA invertase
these give rise to (flagellin) phase variation Jill Banfield (7/26/16)
BD02T64_scaffold_179_79
unknown

Not on your lists

comp(75127..75810)
-----------------
DNA (684bp)
protein (228aa)

This feature has no annotations

BD02T64_scaffold_179_80
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75954..76964)
-----------------
DNA (1011bp)
protein (337aa)
hypothetical protein n=1 Tax=Vibrio crassostreae RepID=UPI00030A7FCC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI60739.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eut
BD02T64_scaffold_179_81
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77297..78553)
-----------------
DNA (1257bp)
protein (419aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:KGJ98068.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KGJ98068.1};; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliace
XRE family transcriptional regulator n=1 Tax=Colwellia piezophila RepID=UPI00037B5E0B
umuC1; umuC protein
BD02T64_scaffold_179_82
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78541..78954)
-----------------
DNA (414bp)
protein (138aa)
umuD2; umuD protein (EC:3.4.21.-)
UmuD protein {ECO:0000313|EMBL:AAZ25664.1}; EC=3.4.21.- {ECO:0000313|EMBL:AAZ25664.1};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;
UmuD protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q480X2_COLP3
BD02T64_scaffold_179_83
unknown

Not on your lists

comp(79090..79515)
-----------------
DNA (426bp)
protein (142aa)

This feature has no annotations

BD02T64_scaffold_179_84
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79824..81821)
-----------------
DNA (1998bp)
protein (666aa)
Putative protease n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q484H5_COLP3 rbh
protease rbh
Putative protease {ECO:0000313|EMBL:AAZ28155.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (st
BD02T64_scaffold_179_85
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81962..82312)
-----------------
DNA (351bp)
protein (117aa)
Putative lipoprotein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q484H7_COLP3 rbh
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AAZ25898.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea
BD02T64_scaffold_179_86
unknown

Not on your lists

comp(82320..82697)
-----------------
DNA (378bp)
protein (126aa)

This feature has no annotations

BD02T64_scaffold_179_87
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82748..83572)
-----------------
DNA (825bp)
protein (275aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q484H8_COLP3 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ24132.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_179_88
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84137..86947)
-----------------
DNA (2811bp)
protein (937aa)
hypothetical protein n=1 Tax=Vibrio cyclitrophicus RepID=UPI00030EA204 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGE66331.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluor
BD02T64_scaffold_179_89
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87396..88451
-----------------
DNA (1056bp)
protein (352aa)
hypothetical protein n=1 Tax=Vibrio cyclitrophicus RepID=UPI00031BC019 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGK42809.1}; TaxID=1545442 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. A-D6.;"
hypothetical protein rbh
BD02T64_scaffold_179_90
Shewanella sp. MR-7, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88622..91480)
-----------------
DNA (2859bp)
protein (953aa)
Serine/threonine protein kinase n=1 Tax=Shewanella sp. (strain MR-7) RepID=Q0HW84_SHESR rbh
serine/threonine protein kinase rbh
Serine/threonine protein kinase {ECO:0000313|EMBL:ABI42621.1}; TaxID=60481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp.
Displaying items 61-90 of 139 in total

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