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BD02T64_scaffold_179

Search features with annotation key words

Displaying items 91-120 of 139 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_179_91
Shewanella sp. ANA-3, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91490..92092)
DNA (603bp) protein (201aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Shewanella sp. (strain ANA-3) RepID=A0KVN2_SHESA rbh
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABK47851.1}; TaxID=94122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source
BD02T64_scaffold_179_92
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(92246..92770)
DNA (525bp) protein (175aa)
Replication protein n=1 Tax=Bacillus cereus (strain ZK / E33L) RepID=Q4V101_BACCZ rbh
firmicute plasmid replication family protein
Firmicute plasmid replication family protein {ECO:0000313|EMBL:AJI14438.1}; TaxID=1396 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacil
No Domains by NCBI; no close hits Jill Banfield (7/26/16)
BD02T64_scaffold_179_93
unknown

Not on your lists

comp(93260..93817)
DNA (558bp) protein (186aa)

This feature has no annotations

BD02T64_scaffold_179_94
unknown

Not on your lists

94050..94586
DNA (537bp) protein (179aa)

This feature has no annotations

BD02T64_scaffold_179_95
Campylobacter fetus, Campylobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

94576..95781
DNA (1206bp) protein (402aa)
Relaxase n=1 Tax=Helicobacter suis HS5 RepID=E7G4U2_9HELI
relaxase/mobilization nuclease domain protein
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:AHE95289.1}; TaxID=1273266 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacte
BD02T64_scaffold_179_96
unknown

Not on your lists

95881..96837
DNA (957bp) protein (319aa)

This feature has no annotations

BD02T64_scaffold_179_97
Alteromonas macleodii, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97026..98159)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) RepID=F2G3V0_ALTMD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA96429.1}; TaxID=314275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas macleo
BD02T64_scaffold_179_98
Alteromonas macleodii, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98143..99243)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) RepID=F2G3U9_ALTMD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEA96428.1}; TaxID=314275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas macleo
BD02T64_scaffold_179_99
Shewanella frigidimarina, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99604..101265)
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Vibrio splendidus RepID=UPI00030FB17F rbh
recombinase rbh
Recombinase {ECO:0000313|EMBL:ABI72453.1}; TaxID=318167 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella frigidimarina (strain
Recombinase domain NCBI, Closest hits in Vibrio Jill Banfield (7/26/16)
BD02T64_scaffold_179_100
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102218..102400)
DNA (183bp) protein (61aa)
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:KGJ93431.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" sour
hypothetical protein
BD02T64_scaffold_179_101
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102787..104451)
DNA (1665bp) protein (555aa)
PAS domain S-box/PAS domain S-box/PAS domain S-box/PAS domain S-box n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4HNV3_9GAMM rbh
PAS domain S-box/PAS domain S-box/PAS domain S-box/PAS domain S-box {ECO:0000313|EMBL:ESP92485.1}; TaxID=1353533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromo
methyl-accepting chemotaxis protein
BD02T64_scaffold_179_102
Paraglaciecola agarilytica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104677..105387)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Algicola sagamiensis RepID=UPI000361BA8A
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:GAC06941.1}; TaxID=1125747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Pa
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
BD02T64_scaffold_179_103
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106334..106639
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000366F36F
Uncharacterized protein {ECO:0000313|EMBL:KGJ93181.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
hypothetical protein
BD02T64_scaffold_179_104
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106922..107521
DNA (600bp) protein (200aa)
Putative membrane protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XL0_COLP3
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AAZ24636.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychreryth
BD02T64_scaffold_179_105
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107623..109140)
DNA (1518bp) protein (506aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XK9_COLP3
BD02T64_scaffold_179_106
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109188..109673)
DNA (486bp) protein (162aa)
bacteriocin production protein n=1 Tax=Colwellia piezophila RepID=UPI00036DF481
Colicin V production protein {ECO:0000313|EMBL:KGJ96364.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrery
cvpA; colicin V production protein
BD02T64_scaffold_179_107
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109754..110434)
DNA (681bp) protein (227aa)
DedD protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XK7_COLP3
dedD; dedD protein
DedD protein {ECO:0000313|EMBL:AAZ26623.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (strain
BD02T64_scaffold_179_108
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110452..111894)
DNA (1443bp) protein (481aa)
FolC bifunctional protein {ECO:0000313|EMBL:KGJ96366.1}; EC=6.3.2.12 {ECO:0000313|EMBL:KGJ96366.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae;
folC; folC bifunctional protein (EC:6.3.2.17)
FolC bifunctional protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XK6_COLP3
BD02T64_scaffold_179_109
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111902..112756)
DNA (855bp) protein (285aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=ACCD_COLP3
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltr
BD02T64_scaffold_179_110
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112921..113703)
DNA (783bp) protein (261aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=TRUA_COLP3
BD02T64_scaffold_179_111
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113798..115063)
DNA (1266bp) protein (422aa)
Conserved domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XK3_COLP3
FimV N-terminal domain-containing protein {ECO:0000313|EMBL:KGJ96369.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwel
hypothetical protein
BD02T64_scaffold_179_112
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115086..117065)
DNA (1980bp) protein (660aa)
Conserved domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XK3_COLP3
FimV N-terminal domain-containing protein {ECO:0000313|EMBL:KGJ96369.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwel
hypothetical protein
BD02T64_scaffold_179_113
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117368..118387)
DNA (1020bp) protein (340aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:000
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
semialdehyde dehydrogenase n=1 Tax=Colwellia piezophila RepID=UPI00036D254B
BD02T64_scaffold_179_114
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118433..119584)
DNA (1152bp) protein (384aa)
Erythronate-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01825, ECO:0000256|SAAS:SAAS00019216}; EC=1.1.1.290 {ECO:0000256|HAMAP-Rule:MF_01825, ECO:0000256|SAAS:SAAS00019244};; TaxID=28229 spec
pdxB; erythronate-4-phosphate dehydrogenase (EC:1.1.1.-)
erythronate-4-phosphate dehydrogenase n=1 Tax=Colwellia piezophila RepID=UPI00036B0CF6
BD02T64_scaffold_179_115
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119739..120953)
DNA (1215bp) protein (405aa)
fabB; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-(Acyl-carrier-protein) synthase I {ECO:0000313|EMBL:AAZ27573.1}; EC=2.3.1.41 {ECO:0000313|EMBL:AAZ27573.1};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonada
3-oxoacyl-(Acyl-carrier-protein) synthase I n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XK0_COLP3
BD02T64_scaffold_179_116
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121238..123277
DNA (2040bp) protein (680aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=MNMC_COLP3
hypothetical protein
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000255|HAMAP-Rule:MF_01102}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000255|HAMAP-Rule:MF_011
BD02T64_scaffold_179_117
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123310..123582)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XJ7_COLP3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ24324.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_179_118
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124106..125524
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI0003827EFB rbh
L-fucose transporter {ECO:0000313|EMBL:KGJ92609.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (
L-fucose transporter
BD02T64_scaffold_179_119
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125941..126948)
DNA (1008bp) protein (336aa)
fucO; L-fucose dehydrogenase (EC:1.1.1.122)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00035C9FA8
NADP-dependent oxidoreductase domain containing protein {ECO:0000313|EMBL:KGJ92596.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;"
Possibly involved in breakdown of fucose Jill Banfield (8/19/16)
BD02T64_scaffold_179_120
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127285..137982)
DNA (10698bp) protein (3566aa)
Ig domain protein group 2 domain protein n=1 Tax=Geobacillus sp. (strain Y412MC10) RepID=D3EC84_GEOS4 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ92598.1}; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwe
hypothetical protein
See curation: variable repeat protein Jill Banfield (8/19/16)
Displaying items 91-120 of 139 in total

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