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BD02T64_scaffold_1002

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1002_1
unknown

Not on your lists

comp(362..457)
DNA (96bp) protein (32aa)

This feature has no annotations

BD02T64_scaffold_1002_2
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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527..991
DNA (465bp) protein (155aa)
RNA-binding protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A10_COLP3
RNA-binding protein
RNA-binding protein {ECO:0000313|EMBL:AAZ25528.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (
BD02T64_scaffold_1002_3
Catenovulum agarivorans, Catenovulum, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1074..2288)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Algicola sagamiensis RepID=UPI00035FB5C1
Uncharacterized protein {ECO:0000313|EMBL:EWH10352.1}; TaxID=1328313 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Catenovulum.;" source="Catenovulum agari
hypothetical protein
BD02T64_scaffold_1002_4
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2476..3570
DNA (1095bp) protein (365aa)
tRNA/tmRNA (uracil-C(5))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01011}; EC=2.1.1.35 {ECO:0000256|HAMAP-Rule:MF_01011};; tRNA (uracil(54)-C(5))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01011}
trmA; tRNA (uracil-5-)-methyltransferase (EC:2.1.1.35)
tRNA (uracil-5-)-methyltransferase n=1 Tax=Colwellia piezophila RepID=UPI00037D8713
BD02T64_scaffold_1002_5
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3586..4221)
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A13_COLP3
DNA-binding transcriptional repressor FabR
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AAZ26238.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwelli
BD02T64_scaffold_1002_6
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4408..5526
DNA (1119bp) protein (373aa)
stearoyl-CoA 9-desaturase (EC:1.14.19.1)
acyl-CoA desaturase n=1 Tax=Colwellia piezophila RepID=UPI000381ED47 rbh
Acyl-CoA desaturase {ECO:0000313|EMBL:KJE44310.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas viridans.
BD02T64_scaffold_1002_7
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5693..7069
DNA (1377bp) protein (459aa)
Soluble pyridine nucleotide transhydrogenase {ECO:0000256|HAMAP-Rule:MF_00247}; Short=STH {ECO:0000256|HAMAP-Rule:MF_00247};; EC=1.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00247};; NAD(P)(+) transhydrogenase
sthA; soluble pyridine nucleotide transhydrogenase (EC:1.6.1.1)
Soluble pyridine nucleotide transhydrogenase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=STHA_COLP3
BD02T64_scaffold_1002_8
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7133..7645
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A15_COLP3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ25185.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_1002_9
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7908..8321)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000377B060
Uncharacterized protein {ECO:0000313|EMBL:KGJ97307.1}; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwe
lipoprotein
BD02T64_scaffold_1002_10
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8415..9656)
DNA (1242bp) protein (414aa)
NADP-dependent malic enzyme, truncated, partial n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=UPI000056E1DB
Malic protein NAD-binding protein {ECO:0000313|EMBL:KGJ97308.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psyc
NADP-dependent malic enzyme, truncated
BD02T64_scaffold_1002_11
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10247..11545)
DNA (1299bp) protein (433aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=PURA_COLP3
BD02T64_scaffold_1002_12
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11693..11863)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Catenovulum agarivorans RepID=UPI0002DF640B rbh
Uncharacterized protein {ECO:0000313|EMBL:KJE45245.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas virid
hypothetical protein
BD02T64_scaffold_1002_13
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12026..12913)
DNA (888bp) protein (296aa)
Protein HflC n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A19_COLP3
hflC; HflC protein
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (strai
BD02T64_scaffold_1002_14
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12917..14065)
DNA (1149bp) protein (383aa)
HflK protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A20_COLP3
hflK; HflK protein
HflK protein {ECO:0000313|EMBL:AAZ24340.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (strain
BD02T64_scaffold_1002_15
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14208..15506)
DNA (1299bp) protein (433aa)
GTPase HflX n=1 Tax=Colwellia piezophila RepID=UPI0003761572
hflX; GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwell
BD02T64_scaffold_1002_16
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15610..15855)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00035EB511
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.
hfq; host factor-I protein
BD02T64_scaffold_1002_17
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16019..16915)
DNA (897bp) protein (299aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=MIAA_COLP3
BD02T64_scaffold_1002_18
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16989..18881)
DNA (1893bp) protein (631aa)
DNA mismatch repair protein MutL n=1 Tax=Colwellia piezophila RepID=UPI00035F991D
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; C
mutL; DNA mismatch repair protein MutL
BD02T64_scaffold_1002_19
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18926..20257)
DNA (1332bp) protein (444aa)
amiB; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4J788_9GAMM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:KJE41391.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalasso
BD02T64_scaffold_1002_20
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20336..20833)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A26_COLP3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ25424.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_1002_21
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21198..22391
DNA (1194bp) protein (398aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=167879 species
iron-sulfur cluster binding protein n=1 Tax=Colwellia piezophila RepID=UPI00037484E3
(Fe-S)-binding protein
BD02T64_scaffold_1002_22
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22428..25757)
DNA (3330bp) protein (1110aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A31_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KJE39998.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actin
hypothetical protein
BD02T64_scaffold_1002_23
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25840..26325)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00036713ED rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ97323.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
hypothetical protein
BD02T64_scaffold_1002_24
Pseudoalteromonas sp. OCN003, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26527..27600
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Anaeromusa acidaminophila RepID=UPI0003634AE7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY67219.1}; TaxID=1348114 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseud
BD02T64_scaffold_1002_25
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27626..28177)
DNA (552bp) protein (184aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae;
orn; oligoribonuclease (EC:3.1.-.-)
oligoribonuclease n=1 Tax=Colwellia piezophila RepID=UPI0003811FB4
BD02T64_scaffold_1002_26
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28264..29304
DNA (1041bp) protein (347aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromo
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VZ3_COLP3
rsgA; ribosome-associated GTPase
BD02T64_scaffold_1002_27
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29337..30260
DNA (924bp) protein (308aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme {ECO:0000255|HAMAP-Rule:MF_00662}; EC=4.1.1.65 {ECO:0000255|HAMAP-Rule:MF_00662};; Contains:; Phosphatidylserine decarboxylase alpha chain {ECO:0000255|HAMAP
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=PSD_COLP3
BD02T64_scaffold_1002_28
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30373..30753
DNA (381bp) protein (127aa)
transcriptional regulator n=1 Tax=Colwellia piezophila RepID=UPI00036A2D18
Transcriptional repressor, CopY family {ECO:0000313|EMBL:KGJ91129.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia
transcriptional regulator
BD02T64_scaffold_1002_29
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30810..32822
DNA (2013bp) protein (671aa)
TonB domain/peptidase M56 domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VZ0_COLP3
TonB domain/peptidase M56 domain-containing protein
TonB domain/peptidase M56 domain protein {ECO:0000313|EMBL:AAZ24612.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwel
BD02T64_scaffold_1002_30
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32819..33310)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000367E83B
Uncharacterized protein {ECO:0000313|EMBL:KJE39989.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actin
hypothetical protein
Displaying items 1-30 of 46 in total

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