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BD02T64_scaffold_3969

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_3969_1

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1..360
DNA (360bp) protein (120aa)
50S ribosomal protein L21 n=1 Tax=Halomonas sp. TD01 RepID=F7SPY7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKN84038.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rplU; 50S ribosomal protein L21
BD02T64_scaffold_3969_2
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

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429..698
DNA (270bp) protein (90aa)
50S ribosomal protein L27 n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KL26_SIMAS
50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 1388
BD02T64_scaffold_3969_3
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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856..2067
DNA (1212bp) protein (404aa)
GTPase Obg n=1 Tax=gamma proteobacterium HdN1 RepID=E1VGG1_9GAMM
GTP-binding protein Obg
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacte
BD02T64_scaffold_3969_4
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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2054..3220
DNA (1167bp) protein (389aa)
proB; glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|H
Glutamate 5-kinase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VGG2_9GAMM
BD02T64_scaffold_3969_5
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3322..3585)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Pseudomonas pelagia RepID=UPI00039C40F4
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
rpsT; 30S ribosomal protein S20
BD02T64_scaffold_3969_6
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3805..5406
DNA (1602bp) protein (534aa)
membrane protein n=1 Tax=Marinobacterium stanieri RepID=UPI000255958B rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinob
mviN; Virulence factor mviN
BD02T64_scaffold_3969_7
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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5552..6517
DNA (966bp) protein (322aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1003181 species="Bacteria; Proteobacte
Riboflavin kinase / FAD synthetase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VGG4_9GAMM
ribF; riboflavin kinase/FAD synthetase
BD02T64_scaffold_3969_8
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6629..7459
DNA (831bp) protein (277aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
isoleucyl-tRNA synthetase n=1 Tax=Amphritea japonica RepID=UPI00038069B1
ileS; isoleucyl-tRNA synthetase
BD02T64_scaffold_3969_9
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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7440..9410
DNA (1971bp) protein (657aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
Isoleucine--tRNA ligase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VGG5_9GAMM
ileS; isoleucyl-tRNA synthetase
BD02T64_scaffold_3969_10
Alcanivorax jadensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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9379..9864
DNA (486bp) protein (162aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
Lipoprotein signal peptidase n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SWL4_META2
lspA; lipoprotein signal peptidase
BD02T64_scaffold_3969_11
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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9803..10369
DNA (567bp) protein (189aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2HCQ0_9GAMM rbh
peptidyl-prolyl isomerase
BD02T64_scaffold_3969_12
Marinobacter lipolyticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10418..11359
DNA (942bp) protein (314aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Marinobacter lipolyticus SM19 RepID=R8AWJ9_9ALTE
BD02T64_scaffold_3969_13
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11461..11844
DNA (384bp) protein (128aa)
Type IV pilin PilE n=3 Tax=Xanthomonas RepID=K8G495_9XANT
Type IV pilin PilE {ECO:0000313|EMBL:EFF48407.1}; TaxID=427082 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans sub
type IV pilin
BD02T64_scaffold_3969_14
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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11844..12401
DNA (558bp) protein (186aa)
Type IV pilus modification protein PilV n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CHU1_ALCDB
type IV pilus modification protein PilV
Type IV pilus modification protein PilV {ECO:0000313|EMBL:AFT71980.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="
BD02T64_scaffold_3969_15
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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12456..13220
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00037DEE79
Uncharacterized protein {ECO:0000313|EMBL:KHD30783.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas den
hypothetical protein
BD02T64_scaffold_3969_16
unknown

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13201..13794
DNA (594bp) protein (198aa)

This feature has no annotations

BD02T64_scaffold_3969_17
Alcanivorax jadensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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13853..16072
DNA (2220bp) protein (740aa)
Uncharacterized protein n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DV21_9GAMM
Pilin biogenesis-like protein {ECO:0000313|EMBL:KGD60038.1}; TaxID=1177181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivor
hypothetical protein
BD02T64_scaffold_3969_18
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16069..16644)
DNA (576bp) protein (192aa)
Tfp pilus assembly protein FimT n=1 Tax=Marinobacter sp. ELB17 RepID=A3JEB8_9ALTE
Tfp pilus assembly protein FimT {ECO:0000313|EMBL:EAZ99343.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobac
type IV pilus biogenesis protein
BD02T64_scaffold_3969_19
unknown

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17024..17644
DNA (621bp) protein (207aa)

This feature has no annotations

BD02T64_scaffold_3969_20
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17701..19098)
DNA (1398bp) protein (466aa)
Response regulator, type IV fimbriae n=1 Tax=gamma proteobacterium HdN1 RepID=E1VGH6_9GAMM rbh
pilR; Response regulator, type IV fimbriae
Response regulator, type IV fimbriae {ECO:0000313|EMBL:CBL43918.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_3969_21
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19142..20476)
DNA (1335bp) protein (445aa)
pilS; Sensor kinase, type IV fimbriae (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1
Sensor kinase, type IV fimbriae n=1 Tax=gamma proteobacterium HdN1 RepID=E1VGH8_9GAMM
BD02T64_scaffold_3969_22
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20811..21053)
DNA (243bp) protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:ERS11244.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp.
Displaying 22 items

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