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BD02T64_Gammaproteobacteria_43_57_partial

BD02T64_Gammaproteobacteria_43_57
In projects: BD02T64

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: BD02T64_UNK

Properties

Avg. coverage: 57.25 Longest contig: 138.77 Kbp Bin length: 5.81 Mbp GC content: 42.94 %
Contigs count: 204 Features count: 4943 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 25 / 55 MC: 3 BSCG 27 / 51 MC: 2 ASCG 13 / 38 MC: 2
Displaying items 1-50 of 204 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
BD02T64_scaffold_260
Class: Gammaproteobacteria (52.42%)
124 138769 bp 42.23 58.27 88.94
BD02T64_scaffold_285
Class: Gammaproteobacteria (81.55%)
103 125403 bp 42.01 58.21 93.50
BD02T64_scaffold_1067
Class: Gammaproteobacteria (73%)
100 110318 bp 42.49 56.71 90.36
BD02T64_scaffold_198
Class: Gammaproteobacteria (67.74%)
93 104754 bp 41.41 58.65 91.93
BD02T64_scaffold_202
Class: Gammaproteobacteria (64.13%)
92 128019 bp 42.52 56.47 94.14
BD02T64_scaffold_229
Class: Gammaproteobacteria (76.92%)
91 107402 bp 42.95 58.50 90.25
BD02T64_scaffold_551
Class: Gammaproteobacteria (52.94%)
85 91979 bp 42.69 55.75 87.99
BD02T64_scaffold_441
Class: Gammaproteobacteria (61.45%)
83 105542 bp 43.26 55.78 90.61
BD02T64_scaffold_689
Class: Gammaproteobacteria (78.05%)
82 103224 bp 43.17 58.24 91.93
BD02T64_scaffold_1174
Class: Gammaproteobacteria (50.63%)
79 95207 bp 43.38 55.93 91.46
BD02T64_scaffold_735
Class: Gammaproteobacteria (70%)
70 75937 bp 42.60 58.38 89.75
BD02T64_scaffold_334
Class: Gammaproteobacteria (62.86%)
70 79981 bp 42.13 57.19 88.58
BD02T64_scaffold_530
Class: Gammaproteobacteria (76.81%)
69 73810 bp 43.73 56.57 90.24
BD02T64_scaffold_1377
Class: Gammaproteobacteria (75.81%)
62 74644 bp 43.26 57.88 90.08
BD02T64_scaffold_883
Class: Gammaproteobacteria (96.72%)
61 68004 bp 42.59 58.61 92.08
BD02T64_scaffold_532
Class: Gammaproteobacteria (76.67%)
60 54035 bp 43.61 57.85 92.31
BD02T64_scaffold_1869
Class: Gammaproteobacteria (78.57%)
56 62811 bp 43.84 58.05 89.47
BD02T64_scaffold_1167
Class: Gammaproteobacteria (87.27%)
55 61860 bp 43.98 57.70 90.30
BD02T64_scaffold_372
Class: Gammaproteobacteria (69.09%)
55 66997 bp 42.17 55.52 88.12
BD02T64_scaffold_1124
Class: Gammaproteobacteria (74.07%)
54 66324 bp 43.96 57.94 88.46
BD02T64_scaffold_425
Species: gamma proteobacterium HdN1 (53.7%)
54 62465 bp 42.96 58.65 90.52
BD02T64_scaffold_517
Class: Gammaproteobacteria (71.7%)
53 54634 bp 42.82 56.67 91.34
BD02T64_scaffold_1339
Class: Gammaproteobacteria (77.36%)
53 55763 bp 43.17 58.85 90.46
BD02T64_scaffold_602
Class: Gammaproteobacteria (51.92%)
52 56088 bp 41.92 57.66 86.75
BD02T64_scaffold_630
Class: Gammaproteobacteria (68.63%)
51 58273 bp 41.49 57.52 90.75
BD02T64_scaffold_1713
Class: Gammaproteobacteria (87.76%)
49 58771 bp 43.97 56.79 89.41
BD02T64_scaffold_1009
Class: Gammaproteobacteria (65.31%)
49 54183 bp 43.78 59.09 91.61
BD02T64_scaffold_662
Class: Gammaproteobacteria (89.58%)
48 60661 bp 39.29 58.28 93.21
BD02T64_scaffold_3275
Class: Gammaproteobacteria (71.74%)
46 41609 bp 40.94 59.46 85.63
BD02T64_scaffold_2098
Class: Gammaproteobacteria (86.96%)
46 51119 bp 42.95 57.89 90.88
BD02T64_scaffold_674
Class: Gammaproteobacteria (63.04%)
46 46667 bp 41.37 59.56 88.69
BD02T64_scaffold_1374
Class: Gammaproteobacteria (71.11%)
45 55207 bp 41.51 59.03 89.67
BD02T64_scaffold_359
Class: Gammaproteobacteria (75.56%)
45 68258 bp 43.01 56.21 90.64
BD02T64_scaffold_1198
Class: Gammaproteobacteria (77.27%)
44 56100 bp 42.82 57.15 92.25
BD02T64_scaffold_606
Class: Gammaproteobacteria (84.09%)
44 56810 bp 42.65 58.27 95.00
BD02T64_scaffold_839
Class: Gammaproteobacteria (62.79%)
43 50589 bp 43.00 57.17 88.35
BD02T64_scaffold_676
Class: Gammaproteobacteria (78.57%)
42 46901 bp 42.00 57.13 93.15
BD02T64_scaffold_1228
Class: Gammaproteobacteria (63.41%)
41 48803 bp 42.99 56.82 87.12
BD02T64_scaffold_986
Class: Gammaproteobacteria (84.62%)
39 47354 bp 42.90 56.43 92.98
BD02T64_scaffold_3750
Class: Gammaproteobacteria (69.23%)
39 40332 bp 42.93 56.00 89.92
BD02T64_scaffold_773
Species: gamma proteobacterium HdN1 (51.28%)
39 68111 bp 42.97 55.89 92.54
BD02T64_scaffold_623
Class: Gammaproteobacteria (94.87%)
39 49676 bp 44.96 55.61 92.28
BD02T64_scaffold_1196
Class: Gammaproteobacteria (63.16%)
38 46081 bp 42.34 56.86 90.64
BD02T64_scaffold_1240
Class: Gammaproteobacteria (94.74%)
38 46000 bp 45.19 58.19 89.60
BD02T64_scaffold_853
Class: Gammaproteobacteria (52.63%)
38 41153 bp 42.69 56.80 87.72
BD02T64_scaffold_714
Class: Gammaproteobacteria (75.68%)
37 45787 bp 42.51 55.12 91.51
BD02T64_scaffold_563
Class: Gammaproteobacteria (78.38%)
37 54691 bp 42.68 57.76 91.52
BD02T64_scaffold_1013
Class: Gammaproteobacteria (70.27%)
37 41143 bp 42.89 57.81 89.43
BD02T64_scaffold_3610
Class: Gammaproteobacteria (91.89%)
37 39480 bp 43.43 56.74 88.99
BD02T64_scaffold_1032
Class: Gammaproteobacteria (62.16%)
37 35987 bp 41.47 57.18 86.10
Displaying items 1-50 of 204 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.