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BD02T64_scaffold_1713

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Displaying items 1-30 of 49 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1713_1
unknown

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1..141
DNA (141bp) protein (47aa)

This feature has no annotations

BD02T64_scaffold_1713_2
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219..1799)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VQV4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL47196.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_3
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2306..3040
DNA (735bp) protein (245aa)
Transcriptional regulator n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLN4_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL45726.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_4
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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3156..4319
DNA (1164bp) protein (388aa)
CheY-like receiver protein n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5E057_9GAMM
CheY-like receiver protein
Uncharacterized protein {ECO:0000313|EMBL:AHK17794.1}; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-1
BD02T64_scaffold_1713_5
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4348..4569)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas rubra ATCC 29570 RepID=U1K8F6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KID55271.1}; TaxID=43657 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoa
hypothetical protein
BD02T64_scaffold_1713_6
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4789..6582
DNA (1794bp) protein (598aa)
Probable signal protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLN6_9GAMM rbh
signal protein
Probable signal protein {ECO:0000313|EMBL:CBL45728.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_7
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6620..7162)
DNA (543bp) protein (181aa)
Rhomboid-like protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLP4_9GAMM
Rhomboid-like protein
Rhomboid-like protein {ECO:0000313|EMBL:CBL45736.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_8
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7302..10136)
DNA (2835bp) protein (945aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
valS; valyl-tRNA ligase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Cellvibrio sp. BR RepID=I3I9U7_9GAMM
BD02T64_scaffold_1713_9
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10256..11023)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLP7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45739.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_10
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11256..11474)
DNA (219bp) protein (73aa)
DNA polymerase III subunit chi n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JJU1_9PSED
DNA polymerase III subunit chi {ECO:0000313|EMBL:EHK68654.1}; TaxID=1112217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomona
DNA polymerase III, chi subunit superfamily
BD02T64_scaffold_1713_11
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11666..13153)
DNA (1488bp) protein (496aa)
pepA; Leucine aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLP9_9GAMM
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=83406 specie
BD02T64_scaffold_1713_12
Pseudomonas kilonensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13335..14552
DNA (1218bp) protein (406aa)
Permease n=1 Tax=Pseudomonas fluorescens F113 RepID=G8Q9X8_PSEFL
permease
Permease {ECO:0000313|EMBL:KKA05588.1}; TaxID=132476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas kilonensis.;"
BD02T64_scaffold_1713_13
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14549..15607
DNA (1059bp) protein (353aa)
Predicted permease YjgP/YjgQ n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLQ1_9GAMM rbh
permease YjgP/YjgQ
Predicted permease YjgP/YjgQ {ECO:0000313|EMBL:CBL45743.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_14
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15670..16131)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLQ2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45744.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_15
Vibrio tubiashii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16461..17606
DNA (1146bp) protein (382aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Vibrio sp. 16 RepID=B8K7C0_9VIBR
S-adenosylmethionine tRNA ribosyltransferase
BD02T64_scaffold_1713_16
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17603..18715
DNA (1113bp) protein (371aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
tgt; tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIF0_NEPCE
BD02T64_scaffold_1713_17
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18799..19128
DNA (330bp) protein (110aa)
Sec-system component preprotein translocase subunit n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLQ5_9GAMM
yajC; Sec-system component preprotein translocase subunit
Sec-system component preprotein translocase subunit {ECO:0000313|EMBL:CBL45747.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_18
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19237..21111
DNA (1875bp) protein (625aa)
preprotein translocase subunit SecD n=1 Tax=Amphritea japonica RepID=UPI00037F1B23
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="
secD; preprotein translocase subunit SecD
BD02T64_scaffold_1713_19
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21126..22037
DNA (912bp) protein (304aa)
Protein-export membrane protein SecF n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIF3_NEPCE
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter
secF; preprotein translocase subunit SecF
BD02T64_scaffold_1713_20
Shewanella woodyi, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22139..23224)
DNA (1086bp) protein (362aa)
Porin Gram-negative type n=1 Tax=Shewanella woodyi (strain ATCC 51908 / MS32) RepID=B1KJ48_SHEWM
porin
Porin Gram-negative type {ECO:0000313|EMBL:ACA87068.1}; Flags: Precursor;; TaxID=392500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="S
BD02T64_scaffold_1713_21
Pseudoalteromonas tunicata, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23856..28559
DNA (4704bp) protein (1568aa)
Probable methyl-accepting chemotaxis protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CEV8_9GAMM rbh
Probable methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EAR26837.1}; TaxID=87626 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromon
methyl-accepting chemotaxis protein rbh
BD02T64_scaffold_1713_22
Pseudoalteromonas sp. OCN003, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28999..31773
DNA (2775bp) protein (925aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Pseudoalteromonas spongiae UST010723-006 RepID=U1M8M6_9GAMM
Chemotaxis protein {ECO:0000313|EMBL:AIY66259.1}; TaxID=1348114 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalte
Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer
BD02T64_scaffold_1713_23
unknown

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comp(31859..32011)
DNA (153bp) protein (51aa)

This feature has no annotations

BD02T64_scaffold_1713_24
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(32181..32984)
DNA (804bp) protein (268aa)
Extragenic suppressor protein SuhB n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLQ9_9GAMM rbh
extragenic suppressor protein SuhB
Extragenic suppressor protein SuhB {ECO:0000313|EMBL:CBL45751.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1713_25
Alcanivorax sp. P2S70, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33189..34055
DNA (867bp) protein (289aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI0003640D38
TrmH family RNA methyltransferase
BD02T64_scaffold_1713_26
Pseudomonas sp. UW4, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34067..34846
DNA (780bp) protein (260aa)
cysE; serine O-acetyltransferase (EC:2.3.1.30)
Serine O-acetyltransferase {ECO:0000313|EMBL:AFY18133.1}; EC=2.3.1.30 {ECO:0000313|EMBL:AFY18133.1};; TaxID=1207075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonad
Serine acetyltransferase n=1 Tax=Pseudomonas sp. GM48 RepID=J2SHT9_9PSED rbh
BD02T64_scaffold_1713_27
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34968..35471
DNA (504bp) protein (168aa)
Transcriptional regulator n=1 Tax=Oleispira antarctica RB-8 RepID=R4YLK2_OLEAN
Transcriptional regulator {ECO:0000313|EMBL:CCK75661.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
Putative HTH-type transcriptional regulator
BD02T64_scaffold_1713_28
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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35505..36704
DNA (1200bp) protein (400aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1232683 species="Bacteri
cysteine desulfurase n=1 Tax=Microbulbifer agarilyticus RepID=UPI0002558A5B
cysteine desulfurase
BD02T64_scaffold_1713_29
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36749..37141
DNA (393bp) protein (131aa)
FeS cluster assembly scaffold IscU n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000382C384 rbh
NifU-like protein {ECO:0000313|EMBL:GAO32725.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;
iscU; scaffold protein
BD02T64_scaffold_1713_30
Vibrio fortis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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37233..37556
DNA (324bp) protein (108aa)
HesB family protein n=3 Tax=Vibrio RepID=B7VJS8_VIBSL
Iron-binding protein IscA {ECO:0000256|SAAS:SAAS00037071}; TaxID=212667 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio fortis.;"
HesB family protein
Displaying items 1-30 of 49 in total

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