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BD02T64_Gammaproteobacteria_43_57_partial

BD02T64_Gammaproteobacteria_43_57
In projects: BD02T64

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: BD02T64_UNK

Properties

Avg. coverage: 57.25 Longest contig: 138.77 Kbp Bin length: 5.81 Mbp GC content: 42.94 %
Contigs count: 204 Features count: 4943 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 25 / 55 MC: 3 BSCG 27 / 51 MC: 2 ASCG 13 / 38 MC: 2
Displaying items 51-100 of 204 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
BD02T64_scaffold_998
Class: Gammaproteobacteria (62.86%)
35 36797 bp 43.01 57.95 88.68
BD02T64_scaffold_1193
Class: Gammaproteobacteria (71.43%)
35 34908 bp 43.83 57.02 86.41
BD02T64_scaffold_823
Class: Gammaproteobacteria (71.43%)
35 41542 bp 44.74 56.13 88.04
BD02T64_scaffold_651
Class: Gammaproteobacteria (68.57%)
35 47680 bp 41.60 56.71 91.16
BD02T64_scaffold_615
Class: Gammaproteobacteria (76.47%)
34 49562 bp 42.03 58.68 93.57
BD02T64_scaffold_923
Class: Gammaproteobacteria (61.76%)
34 38778 bp 42.00 58.97 91.61
BD02T64_scaffold_2415
Class: Gammaproteobacteria (81.82%)
33 39511 bp 43.68 58.72 91.26
BD02T64_scaffold_2185
Class: Gammaproteobacteria (78.79%)
33 33500 bp 43.39 56.75 91.24
BD02T64_scaffold_1613
Class: Gammaproteobacteria (78.79%)
33 42284 bp 43.73 56.74 92.24
BD02T64_scaffold_1060
Class: Gammaproteobacteria (71.88%)
32 37577 bp 42.82 57.72 91.96
BD02T64_scaffold_1109
Class: Gammaproteobacteria (62.5%)
32 34039 bp 43.42 57.73 90.80
BD02T64_scaffold_830
Class: Gammaproteobacteria (74.19%)
31 41427 bp 42.86 58.77 91.06
BD02T64_scaffold_2023
Class: Gammaproteobacteria (90%)
30 29697 bp 42.76 56.79 90.55
BD02T64_scaffold_3002
Class: Gammaproteobacteria (90%)
30 29014 bp 43.91 57.49 89.50
BD02T64_scaffold_1544
Species: gamma proteobacterium HdN1 (50%)
30 33958 bp 43.14 57.35 90.87
BD02T64_scaffold_3418
Class: Gammaproteobacteria (65.52%)
29 37512 bp 42.53 56.45 88.79
BD02T64_scaffold_1411
Class: Gammaproteobacteria (75%)
28 31458 bp 42.92 57.15 87.62
BD02T64_scaffold_2807
Class: Gammaproteobacteria (64.29%)
28 28319 bp 42.09 57.81 86.88
BD02T64_scaffold_1589
Class: Gammaproteobacteria (71.43%)
28 34245 bp 44.22 57.84 89.79
BD02T64_scaffold_1073
Class: Gammaproteobacteria (59.26%)
27 35012 bp 42.90 55.61 88.86
BD02T64_scaffold_1461
Class: Gammaproteobacteria (92.31%)
26 28370 bp 45.12 56.83 92.38
BD02T64_scaffold_1528
Class: Gammaproteobacteria (65.38%)
26 27990 bp 43.43 57.03 89.07
BD02T64_scaffold_1910
Species: gamma proteobacterium HdN1 (52%)
25 22353 bp 44.50 55.03 86.78
BD02T64_scaffold_1446
Class: Gammaproteobacteria (96%)
25 27724 bp 44.27 57.03 90.63
BD02T64_scaffold_1558
Class: Gammaproteobacteria (83.33%)
24 26249 bp 43.32 57.33 88.94
BD02T64_scaffold_3404
Class: Gammaproteobacteria (66.67%)
24 26429 bp 42.04 59.89 91.31
BD02T64_scaffold_1977
Class: Gammaproteobacteria (60.87%)
23 21597 bp 43.08 56.38 91.03
BD02T64_scaffold_854
Class: Gammaproteobacteria (73.91%)
23 40714 bp 42.76 54.92 89.39
BD02T64_scaffold_3969
Class: Gammaproteobacteria (86.36%)
22 21181 bp 44.24 59.32 91.27
BD02T64_scaffold_3203
Species: gamma proteobacterium HdN1 (50%)
22 21718 bp 43.43 52.72 84.40
BD02T64_scaffold_2496
Class: Gammaproteobacteria (50%)
22 22551 bp 44.28 52.94 90.21
BD02T64_scaffold_2047
Class: Gammaproteobacteria (50%)
22 31010 bp 42.56 58.11 93.37
BD02T64_scaffold_1471
Class: Gammaproteobacteria (86.36%)
22 27708 bp 43.92 54.24 88.25
BD02T64_scaffold_2074
Class: Gammaproteobacteria (100%)
22 26295 bp 44.54 57.57 90.71
BD02T64_scaffold_2148
Class: Gammaproteobacteria (66.67%)
21 20204 bp 42.64 56.29 91.42
BD02T64_scaffold_3035
Class: Gammaproteobacteria (95%)
20 26687 bp 43.63 60.15 88.80
BD02T64_scaffold_3623
Class: Gammaproteobacteria (80%)
20 24283 bp 41.66 56.04 85.57
BD02T64_scaffold_1616
Class: Gammaproteobacteria (55%)
20 25826 bp 42.89 56.40 88.16
BD02T64_scaffold_964
Class: Gammaproteobacteria (57.89%)
19 54091 bp 42.51 56.47 94.73
BD02T64_scaffold_2359
Class: Gammaproteobacteria (57.89%)
19 18653 bp 43.77 57.08 92.48
BD02T64_scaffold_5910
Class: Gammaproteobacteria (50%)
18 16691 bp 41.89 61.23 77.68
BD02T64_scaffold_2119
Class: Gammaproteobacteria (61.11%)
18 20444 bp 42.30 60.55 87.71
BD02T64_scaffold_4253
Class: Gammaproteobacteria (88.89%)
18 17227 bp 45.00 54.80 93.38
BD02T64_scaffold_1088
Class: Gammaproteobacteria (55.56%)
18 34631 bp 43.07 53.35 92.18
BD02T64_scaffold_2718
Class: Gammaproteobacteria (50%)
18 16485 bp 41.58 59.56 89.90
BD02T64_scaffold_2213
Class: Gammaproteobacteria (72.22%)
18 19784 bp 42.78 58.04 86.49
BD02T64_scaffold_2220
Class: Gammaproteobacteria (72.22%)
18 19730 bp 40.53 57.79 87.51
BD02T64_scaffold_2740
Class: Gammaproteobacteria (82.35%)
17 16393 bp 42.93 58.11 89.82
BD02T64_scaffold_3003
Class: Gammaproteobacteria (82.35%)
17 18390 bp 42.95 57.01 85.81
BD02T64_scaffold_3427
Class: Gammaproteobacteria (64.71%)
17 18155 bp 41.78 59.42 91.41
Displaying items 51-100 of 204 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.