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BD02T64_scaffold_1544

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1544_1
unknown

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comp(180..572)
DNA (393bp) protein (131aa)

This feature has no annotations

BD02T64_scaffold_1544_2
Alcanivorax sp. DG881, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(611..1264)
DNA (654bp) protein (218aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
adenylate kinase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255A495
adenylate kinase
BD02T64_scaffold_1544_3
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1566..2996)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNN7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL46429.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1544_4
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3298..4638)
DNA (1341bp) protein (447aa)
TPR repeat n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82WC1_NITEU rbh
cycH; hypothetical protein
TPR repeat {ECO:0000313|EMBL:CAD84682.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain
BD02T64_scaffold_1544_5
Pseudomonas plecoglossicida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4641..5192)
DNA (552bp) protein (184aa)
Cytochrome C biogenesis protein n=1 Tax=Pseudomonas plecoglossicida NB2011 RepID=S2JYW4_9PSED rbh
Cytochrome C biogenesis protein {ECO:0000313|EMBL:EPB95099.1}; TaxID=1330531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomon
cytochrome c heme lyase subunit CcmL
BD02T64_scaffold_1544_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5189..5722)
DNA (534bp) protein (178aa)
thiol:disulfide interchange protein n=1 Tax=Pseudomonas agarici RepID=UPI0002E92998
thiol:disulfide interchange protein
Thiol:disulfide interchange protein {ECO:0000313|EMBL:KIL05134.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomon
BD02T64_scaffold_1544_7
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5748..7751)
DNA (2004bp) protein (668aa)
Cytochrome c-type biogenesis protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNN3_9GAMM
ccmF; cytochrome c-type biogenesis protein
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:CBL46425.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1544_8
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8230..8745
DNA (516bp) protein (172aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-
3-hydroxydecanoyl-(acyl carrier protein) dehydratase (EC:4.2.1.59)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=9 Tax=Alteromonas macleodii RepID=K0D159_ALTMS
BD02T64_scaffold_1544_9
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8756..9976
DNA (1221bp) protein (407aa)
3-oxoacyl-[acyl-carrier-protein] synthase, KASI {ECO:0000313|EMBL:KEA64511.1}; EC=2.3.1.41 {ECO:0000313|EMBL:KEA64511.1};; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alterom
3-oxoacyl-ACP synthase n=1 Tax=Amphritea japonica RepID=UPI0003808002
fabB2; 3-oxoacyl-ACP synthase
BD02T64_scaffold_1544_10
Alcanivorax sp. P2S70, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10054..11136)
DNA (1083bp) protein (361aa)
Porin n=1 Tax=Alcanivorax sp. P2S70 RepID=U7G3H2_9GAMM
Porin {ECO:0000313|EMBL:ERP91196.1}; TaxID=1397527 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. P2S70.;"
porin
BD02T64_scaffold_1544_11
Alcanivorax borkumensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11312..12403)
DNA (1092bp) protein (364aa)
Outer membrane porin, putative n=1 Tax=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) RepID=Q0VP29_ALCBS
porin
Outer membrane porin, putative {ECO:0000313|EMBL:CAL17069.1}; TaxID=393595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivor
BD02T64_scaffold_1544_12
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12816..13526)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNM9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL46421.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1544_13
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13608..14393)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNM8_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL46420.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1544_14
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14482..15435)
DNA (954bp) protein (318aa)
accA; acetyl-CoA carboxylase, alpha subunit (EC:6.4.1.2)
Acetyl-CoA carboxylase, alpha subunit n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNM7_9GAMM rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
BD02T64_scaffold_1544_15
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15641..19111)
DNA (3471bp) protein (1157aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobact
DNA polymerase III alpha subunit n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNM6_9GAMM
dnaE; DNA polymerase III subunit alpha
BD02T64_scaffold_1544_16
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19183..19785)
DNA (603bp) protein (201aa)
Ribonuclease HII {ECO:0000313|EMBL:AKH19314.1}; EC=3.1.26.4 {ECO:0000313|EMBL:AKH19314.1};; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola
ribonuclease HII (EC:3.1.26.4)
hypothetical protein n=1 Tax=Piscirickettsia salmonis RepID=UPI0002DCC340 rbh
BD02T64_scaffold_1544_17
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19855..21039)
DNA (1185bp) protein (395aa)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=83406 species="Bac
Lipid-A-disaccharide synthase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNM4_9GAMM
lpxB; Lipid A disaccharide synthetase
BD02T64_scaffold_1544_18
Alcanivorax sp. P2S70, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21039..21806)
DNA (768bp) protein (256aa)
lpxA; acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
UDP-N-acetylglucosamine acyltransferase n=1 Tax=Alcanivorax sp. P2S70 RepID=U7G4M1_9GAMM rbh
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMA
BD02T64_scaffold_1544_19
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21803..22246)
DNA (444bp) protein (148aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000255|HAMAP-Rule:MF_00406}; EC=4.2.1.59 {ECO:0000255|HAMAP-Rule:MF_00406};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=FABZ_CELJU
BD02T64_scaffold_1544_20
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22397..23443)
DNA (1047bp) protein (349aa)
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523, ECO:0000313|EMBL:CBL46413.1};; TaxID=83406 species="Bacteria; Proteobacteria;
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNM1_9GAMM
BD02T64_scaffold_1544_21
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23537..24034)
DNA (498bp) protein (166aa)
Outer membrane protein (OmpH-like) n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNM0_9GAMM
outer membrane protein (OmpH-like)
Outer membrane protein (OmpH-like) {ECO:0000313|EMBL:CBL46412.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1544_22
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24076..26430)
DNA (2355bp) protein (785aa)
Outer membrane protein assembly factor BamA n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNL9_9GAMM
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" s
outer membrane protein, bacterial surface antigen family
BD02T64_scaffold_1544_23
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26460..27821)
DNA (1362bp) protein (454aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium
Protease EcfE n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNL8_9GAMM
ecfE; Protease EcfE
BD02T64_scaffold_1544_24
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27837..29069)
DNA (1233bp) protein (411aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNL7_9GAMM
BD02T64_scaffold_1544_25
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29066..29875)
DNA (810bp) protein (270aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:CBL46408.1}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:CBL46408.1};; TaxID=83406 species="Bacteri
Phosphatidate cytidylyltransferase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNL6_9GAMM
BD02T64_scaffold_1544_26
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29875..30753)
DNA (879bp) protein (293aa)
uppS; Undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.31 {ECO:0000256|HAMAP-Rule:MF_01139, ECO:0000313|EMBL:CBL46407.1};
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNL5_9GAMM rbh
BD02T64_scaffold_1544_27
gamma proteobacterium IMCC2047, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30780..31337)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KGD2_9GAMM rbh
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=434085 species="Bacteria;
frr; ribosome recycling factor
BD02T64_scaffold_1544_28
Marinomonas sp. MED121, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31345..32076)
DNA (732bp) protein (244aa)
pyrH; uridylate kinase (EC:2.7.4.-)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
Uridylate kinase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5N2_9GAMM rbh
BD02T64_scaffold_1544_29
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32117..33001)
DNA (885bp) protein (295aa)
Elongation factor Ts n=2 Tax=Alcanivorax borkumensis RepID=EFTS_ALCBS
tsf; translation elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1177154 species="Bacteria; Proteobacteria; Gammaproteobacte
BD02T64_scaffold_1544_30
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(33125..33880)
DNA (756bp) protein (252aa)
30S ribosomal protein S2 n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNL1_9GAMM rbh
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000313|EMBL:CBL46403.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
Displaying 30 items

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