ggKbase home page

BD02T64_scaffold_998

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_998_1
unknown

Not on your lists

comp(1..93)
DNA (93bp) protein (31aa)

This feature has no annotations

BD02T64_scaffold_998_2
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

292..1497
DNA (1206bp) protein (402aa)
Predicted saccharopine dehydrogenase and related protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPP0_9GAMM rbh
saccharopine dehydrogenase
Predicted saccharopine dehydrogenase and related protein {ECO:0000313|EMBL:CBL46782.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_998_3
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1512..3155
DNA (1644bp) protein (548aa)
Aldehyde dehydrogenase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPP1_9GAMM rbh
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:CBL46783.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_998_4
Photobacterium leiognathi, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3235..3537
DNA (303bp) protein (101aa)
Antibiotic biosynthesis monooxygenase family protein n=1 Tax=Photobacterium leiognathi subsp. mandapamensis svers.1.1. RepID=F2P8A5_PHOMO
Antibiotic biosynthesis monooxygenase family protein {ECO:0000313|EMBL:GAA04176.1}; TaxID=1001530 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" s
antibiotic biosynthesis monooxygenase
BD02T64_scaffold_998_5
unknown

Not on your lists

3564..3995
DNA (432bp) protein (144aa)

This feature has no annotations

BD02T64_scaffold_998_6
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4005..6404)
DNA (2400bp) protein (800aa)
Putative membrane protein MJ1562 n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7JKZ7_PSEPS
RND transporter {ECO:0000313|EMBL:KFJ91268.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
putative membrane protein MJ1562
BD02T64_scaffold_998_7
Marinobacter manganoxydans, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6615..9803
DNA (3189bp) protein (1063aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Marinobacter manganoxydans MnI7-9 RepID=G6YZ18_9ALTE
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EHJ02560.1}; TaxID=1094979 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Mar
multi-sensor hybrid histidine kinase
BD02T64_scaffold_998_8
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9822..10952)
DNA (1131bp) protein (377aa)
msrAB; peptide methionine sulfoxide reductase MsrAB Tax=RBG_16_Deltaproteobacteria_47_11_curated
Methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase id=4012165 bin=GWF2_OP3_43_52 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
methionine sulfoxide reductase
BD02T64_scaffold_998_9
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11159..12427)
DNA (1269bp) protein (423aa)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSX1_9GAMM
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
MiaB-like tRNA modifying enzyme YliG
BD02T64_scaffold_998_10
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12630..12866)
DNA (237bp) protein (79aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
BD02T64_scaffold_998_11
Shewanella sediminis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12866..13861)
DNA (996bp) protein (332aa)
Sensory box protein n=1 Tax=Shewanella sediminis (strain HAW-EB3) RepID=A8FSE2_SHESH rbh
sensory box protein
Sensory box protein {ECO:0000313|EMBL:ABV35765.1}; TaxID=425104 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sediminis (str
BD02T64_scaffold_998_12
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13910..15604)
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Algicola sagamiensis RepID=UPI00036E172B rbh
metal-dependent hydrolase with the TIM-barrel fold
Predicted metal-dependent hydrolase with the TIM-barrel fold {ECO:0000313|EMBL:ABC33536.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella
BD02T64_scaffold_998_13
marine gamma proteobacterium HTCC2143, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15615..16979)
DNA (1365bp) protein (455aa)
Molecular chaperone n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YD65_9GAMM rbh
Molecular chaperone {ECO:0000313|EMBL:EAW31168.1}; TaxID=247633 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; BD1-7 clade.;" source="marine gamma proteobacterium HTCC2143.;"
putative chaperone
BD02T64_scaffold_998_14
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17172..18236
DNA (1065bp) protein (355aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FI18_DESAA
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACL02585.1}; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" sour
BD02T64_scaffold_998_15
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18604..21054)
DNA (2451bp) protein (817aa)
Putative uncharacterized protein n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DFM8_9GAMM
RND transporter {ECO:0000313|EMBL:KHD10935.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita ne
hypothetical protein
BD02T64_scaffold_998_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21051..21800)
DNA (750bp) protein (250aa)
Transcriptional regulator n=2 Tax=Singulisphaera acidiphila RepID=L0DFB6_SINAD rbh
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA28074.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera a
BD02T64_scaffold_998_17
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22062..22985
DNA (924bp) protein (308aa)
ABC transporter n=1 Tax=Marinobacterium stanieri RepID=UPI0002559E42
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:KDE39132.1}; TaxID=267850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitri
30S ribosomal protein S16
BD02T64_scaffold_998_18
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23067..23840
DNA (774bp) protein (258aa)
ABC-type multidrug transport system, permease component n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SDT1_HAHCH
multidrug ABC transporter permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (
BD02T64_scaffold_998_19
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23844..24728
DNA (885bp) protein (295aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817};
7-cyano-7-deazaguanine reductase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNZ5_9GAMM rbh
queF; 7-cyano-7-deazaguanine reductase rbh
BD02T64_scaffold_998_20
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24754..26154)
DNA (1401bp) protein (467aa)
Putative adenylate cyclase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNZ9_9GAMM
adenylate cyclase
Putative adenylate cyclase {ECO:0000313|EMBL:CBL46541.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_998_21
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(26397..27197)
DNA (801bp) protein (267aa)
Endonuclease V (EC:3.1.21.-)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-
Endonuclease V n=1 Tax=Calothrix sp. PCC 6303 RepID=K9V9C7_9CYAN
BD02T64_scaffold_998_22
Alcanivorax jadensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27427..27993
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8QYY5_PSEAI
Nitroreductase family protein {ECO:0000313|EMBL:KGD61657.1}; TaxID=1177181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivor
ydjA; hypothetical protein
BD02T64_scaffold_998_23
Agarivorans albus, Agarivorans, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27990..28925)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI0003756482
Transcriptional regulator {ECO:0000313|EMBL:GAD00034.1}; TaxID=1331007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans.;" source="Agarivorans alb
LysR family transcriptional regulator rbh
BD02T64_scaffold_998_24
Agarivorans albus, Agarivorans, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29010..29582
DNA (573bp) protein (191aa)
NADPH:quinone oxidoreductase n=1 Tax=Agarivorans albus MKT 106 RepID=R9PFK3_AGAAL rbh
NADPH:quinone oxidoreductase {ECO:0000313|EMBL:GAD00033.1}; TaxID=1331007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans.;" source="Agarivorans
flavoprotein
BD02T64_scaffold_998_25
Marinomonas sp. S3726, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29594..30124
DNA (531bp) protein (177aa)
Cytochrome b561 n=1 Tax=Pseudomonas fluorescens F113 RepID=G8PZS4_PSEFL rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ11539.1}; TaxID=579484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. S3726.;"
cytochrome b561
BD02T64_scaffold_998_26
Photorhabdus luminescens, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30327..30656
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Serratia sp. ATCC 39006 RepID=V3V8J7_9ENTR
XRE family transcriptional regulator {ECO:0000313|EMBL:KGM28757.1}; TaxID=29488 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="P
helix-turn-helix domain protein
BD02T64_scaffold_998_27
Serratia sp. DD3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30650..31966
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Serratia sp. ATCC 39006 RepID=V3TTB2_9ENTR rbh
Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:KEY58604.1}; TaxID=1410619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" s
HipA domain protein
BD02T64_scaffold_998_28
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32080..32436
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZNC3_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKN00806.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX
hypothetical protein
BD02T64_scaffold_998_29
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32433..32924
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L7V1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KDE90306.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas malto
BD02T64_scaffold_998_30
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32973..33254
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Cupriavidus basilensis OR16 RepID=H1SE21_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EHP39280.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basile
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy