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BD02T64_Gammaproteobacteria_43_57_partial

BD02T64_Gammaproteobacteria_43_57
In projects: BD02T64

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: BD02T64_UNK

Properties

Avg. coverage: 57.25 Longest contig: 138.77 Kbp Bin length: 5.81 Mbp GC content: 42.94 %
Contigs count: 204 Features count: 4943 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 25 / 55 MC: 3 BSCG 27 / 51 MC: 2 ASCG 13 / 38 MC: 2
Displaying items 1-50 of 204 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
BD02T64_scaffold_12181
Species: gamma proteobacterium HdN1 (66.67%)
3 3442 bp 38.76 81.36 95.35
BD02T64_scaffold_9747
Class: Gammaproteobacteria (80%)
5 6518 bp 40.49 63.93 92.47
BD02T64_scaffold_12646
Class: Gammaproteobacteria (60%)
5 3863 bp 44.97 62.59 91.17
BD02T64_scaffold_7730
Class: Gammaproteobacteria (57.14%)
7 5642 bp 42.87 62.40 90.23
BD02T64_scaffold_8862
Class: Gammaproteobacteria (50%)
4 4856 bp 43.76 62.34 87.48
BD02T64_scaffold_7106
Class: Gammaproteobacteria (80%)
5 6203 bp 41.53 61.62 95.76
BD02T64_scaffold_3942
Class: Gammaproteobacteria (70%)
10 13484 bp 42.27 61.56 79.38
BD02T64_scaffold_5910
Class: Gammaproteobacteria (50%)
18 16691 bp 41.89 61.23 77.68
BD02T64_scaffold_6043
Class: Gammaproteobacteria (66.67%)
6 7398 bp 39.81 61.21 83.58
BD02T64_scaffold_13402
Class: Gammaproteobacteria (50%)
4 3108 bp 47.07 61.20 74.81
BD02T64_scaffold_2241
Class: Gammaproteobacteria (81.25%)
16 19571 bp 40.45 60.83 91.28
BD02T64_scaffold_7175
Class: Gammaproteobacteria (83.33%)
6 6131 bp 41.28 60.55 82.55
BD02T64_scaffold_2119
Class: Gammaproteobacteria (61.11%)
18 20444 bp 42.30 60.55 87.71
BD02T64_scaffold_2482
Class: Gammaproteobacteria (66.67%)
15 17853 bp 43.06 60.48 97.03
BD02T64_scaffold_2944
Class: Gammaproteobacteria (62.5%)
8 15377 bp 42.51 60.39 94.86
BD02T64_scaffold_2622
Class: Gammaproteobacteria (84.62%)
13 18528 bp 43.31 60.38 89.15
BD02T64_scaffold_5721
Class: Gammaproteobacteria (100%)
13 16105 bp 41.25 60.38 89.64
BD02T64_scaffold_3035
Class: Gammaproteobacteria (95%)
20 26687 bp 43.63 60.15 88.80
BD02T64_scaffold_10821
Class: Gammaproteobacteria (60%)
5 3927 bp 39.67 60.08 67.30
BD02T64_scaffold_8680
Class: Gammaproteobacteria (80%)
5 4962 bp 44.88 59.92 88.27
BD02T64_scaffold_3404
Class: Gammaproteobacteria (66.67%)
24 26429 bp 42.04 59.89 91.31
BD02T64_scaffold_5597
Class: Gammaproteobacteria (83.33%)
12 10088 bp 43.21 59.61 88.23
BD02T64_scaffold_2718
Class: Gammaproteobacteria (50%)
18 16485 bp 41.58 59.56 89.90
BD02T64_scaffold_674
Class: Gammaproteobacteria (63.04%)
46 46667 bp 41.37 59.56 88.69
BD02T64_scaffold_6137
Class: Gammaproteobacteria (77.78%)
9 7299 bp 39.20 59.54 89.15
BD02T64_scaffold_11280
Species: gamma proteobacterium HdN1 (100%)
1 5975 bp 43.41 59.47 99.97
BD02T64_scaffold_3275
Class: Gammaproteobacteria (71.74%)
46 41609 bp 40.94 59.46 85.63
BD02T64_scaffold_9544
Class: Gammaproteobacteria (100%)
5 4508 bp 41.68 59.43 81.85
BD02T64_scaffold_3427
Class: Gammaproteobacteria (64.71%)
17 18155 bp 41.78 59.42 91.41
BD02T64_scaffold_2838
Species: gamma proteobacterium HdN1 (62.5%)
16 15875 bp 43.46 59.33 91.37
BD02T64_scaffold_3969
Class: Gammaproteobacteria (86.36%)
22 21181 bp 44.24 59.32 91.27
BD02T64_scaffold_8041
Class: Gammaproteobacteria (80%)
5 5396 bp 43.90 59.32 88.45
BD02T64_scaffold_6665
Species: gamma proteobacterium HdN1 (66.67%)
9 10627 bp 41.59 59.31 86.86
BD02T64_scaffold_3306
Class: Gammaproteobacteria (66.67%)
12 13793 bp 43.25 59.25 94.55
BD02T64_scaffold_1009
Class: Gammaproteobacteria (65.31%)
49 54183 bp 43.78 59.09 91.61
BD02T64_scaffold_1374
Class: Gammaproteobacteria (71.11%)
45 55207 bp 41.51 59.03 89.67
BD02T64_scaffold_13358
Class: Gammaproteobacteria (100%)
5 3120 bp 44.42 58.99 90.77
BD02T64_scaffold_923
Class: Gammaproteobacteria (61.76%)
34 38778 bp 42.00 58.97 91.61
BD02T64_scaffold_1339
Class: Gammaproteobacteria (77.36%)
53 55763 bp 43.17 58.85 90.46
BD02T64_scaffold_830
Class: Gammaproteobacteria (74.19%)
31 41427 bp 42.86 58.77 91.06
BD02T64_scaffold_2415
Class: Gammaproteobacteria (81.82%)
33 39511 bp 43.68 58.72 91.26
BD02T64_scaffold_615
Class: Gammaproteobacteria (76.47%)
34 49562 bp 42.03 58.68 93.57
BD02T64_scaffold_4320
Class: Gammaproteobacteria (77.78%)
9 10559 bp 40.73 58.66 88.33
BD02T64_scaffold_198
Class: Gammaproteobacteria (67.74%)
93 104754 bp 41.41 58.65 91.93
BD02T64_scaffold_425
Species: gamma proteobacterium HdN1 (53.7%)
54 62465 bp 42.96 58.65 90.52
BD02T64_scaffold_883
Class: Gammaproteobacteria (96.72%)
61 68004 bp 42.59 58.61 92.08
BD02T64_scaffold_1336
Class: Gammaproteobacteria (80%)
10 36174 bp 42.80 58.61 94.14
BD02T64_scaffold_3227
Species: gamma proteobacterium HdN1 (53.85%)
13 14520 bp 43.07 58.53 96.63
BD02T64_scaffold_229
Class: Gammaproteobacteria (76.92%)
91 107402 bp 42.95 58.50 90.25
BD02T64_scaffold_3052
Class: Gammaproteobacteria (50%)
14 14861 bp 41.59 58.48 85.94
Displaying items 1-50 of 204 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.