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BD02T64_scaffold_1869

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1869_1
Pseudomonas syringae group genomosp. 3, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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85..1530
DNA (1446bp) protein (482aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
gatB; glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Pseudomonas syringae pv. maculicola str. ES4326 RepID=F3HG30_PSEYM
BD02T64_scaffold_1869_2
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1608..2258)
DNA (651bp) protein (217aa)
2OG-Fe(II) oxygenase n=1 Tax=Osedax symbiont Rs2 RepID=S6HIY6_9GAMM
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:EPJ48842.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont
2OG-Fe(II) oxygenase
BD02T64_scaffold_1869_3
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2289..3044)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Amphritea japonica RepID=UPI000363C170 rbh
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:EAR60102.1}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter
thiF; adenylyltransferase rbh
BD02T64_scaffold_1869_4
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3041..3892)
DNA (852bp) protein (284aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
hemK; protein-(glutamine-N5) methyltransferase (EC:2.1.1.-)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Aliivibrio fischeri RepID=UPI0002E85282
BD02T64_scaffold_1869_5
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3894..5105)
DNA (1212bp) protein (404aa)
Peptide chain release factor 1 n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=RF1_SACD2
bacterial peptide chain release factor 1 (bRF-1)
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; A
BD02T64_scaffold_1869_6
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5153..6430)
DNA (1278bp) protein (426aa)
hemA; glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|Rule
Glutamyl-tRNA reductase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VKV2_9GAMM
BD02T64_scaffold_1869_7
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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6780..8510
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VKU6_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45438.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1869_8
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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8555..9190
DNA (636bp) protein (212aa)
Outer-membrane lipoprotein LolB n=1 Tax=gamma proteobacterium HdN1 RepID=E1VKU5_9GAMM rbh
lolB; Outer membrane lipoprotein
Outer-membrane lipoprotein LolB {ECO:0000256|HAMAP-Rule:MF_00233, ECO:0000256|SAAS:SAAS00002103}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium Hd
BD02T64_scaffold_1869_9

Not on your lists

9187..10095
DNA (909bp) protein (303aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Pseudomonas pelagia RepID=UPI0003A77DE7
Uncharacterized protein {ECO:0000313|EMBL:KKN50614.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
kinase
BD02T64_scaffold_1869_10
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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10317..11273
DNA (957bp) protein (319aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
ribose-phosphate pyrophosphokinase n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B517C4 rbh
BD02T64_scaffold_1869_11
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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11336..11965
DNA (630bp) protein (210aa)
50S ribosomal protein L25 n=1 Tax=Alcanivorax sp. P2S70 RepID=U7FXD4_9GAMM
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1177154 s
50S ribosomal protein L25/general stress protein Ctc
BD02T64_scaffold_1869_12
Tolumonas auensis, Tolumonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12012..12602
DNA (591bp) protein (197aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; TaxID=595494 species="Bacteria; Proteobacteria;
Peptidyl-tRNA hydrolase n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=PTH_TOLAT
BD02T64_scaffold_1869_13
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12622..13713
DNA (1092bp) protein (364aa)
Ribosome-binding ATPase YchF n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HPI1_9GAMM
ychF; GTPase
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcaniv
BD02T64_scaffold_1869_14
unknown

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13978..14589
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000377A9E0 rbh
BD02T64_scaffold_1869_15
unknown

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comp(14756..15001)
DNA (246bp) protein (82aa)

This feature has no annotations

BD02T64_scaffold_1869_16
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15174..15512)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255B9A3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEI70526.1}; TaxID=305900 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas ely
BD02T64_scaffold_1869_17
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16076..17197
DNA (1122bp) protein (374aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea
cytochrome-c oxidase (EC:1.9.3.1)
Cytochrome c oxidase subunit 2 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ72_9GAMM
BD02T64_scaffold_1869_18
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

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17214..18812
DNA (1599bp) protein (533aa)
Aa3-type cytochrome c oxidase CoxAB, subunit A {ECO:0000313|EMBL:KHF24066.1}; EC=1.9.3.1 {ECO:0000313|EMBL:KHF24066.1};; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidi
cytochrome-c oxidase (EC:1.9.3.1)
Cytochrome c oxidase subunit I n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ71_9GAMM rbh
BD02T64_scaffold_1869_19
unknown

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18893..19021
DNA (129bp) protein (43aa)

This feature has no annotations

BD02T64_scaffold_1869_20
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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19050..19694
DNA (645bp) protein (215aa)
Cytochrome c oxidase assembly protein CtaG/Cox11 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ69_9GAMM
Cytochrome c oxidase assembly protein CtaG/Cox11 {ECO:0000313|EMBL:EIJ33512.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source=
cytochrome c oxidase assembly protein CtaG/Cox11
BD02T64_scaffold_1869_21
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19763..20128
DNA (366bp) protein (122aa)
Cytochrome c oxidase subunit III family protein n=9 Tax=Pseudomonas aeruginosa RepID=T2EKR1_PSEAI
cytochrome c oxidase subunit III family protein
MFS transporter {ECO:0000313|EMBL:KEX95311.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobac
BD02T64_scaffold_1869_22
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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20214..20636
DNA (423bp) protein (141aa)
Cytochrome c oxidase subunit III n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ68_9GAMM
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:EIJ33511.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea
cytochrome c oxidase subunit III
BD02T64_scaffold_1869_23
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20775..20981)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ67_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KHF24062.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
BD02T64_scaffold_1869_24
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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21133..21819
DNA (687bp) protein (229aa)
Surfeit locus 1 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ66_9GAMM
Surfeit locus 1 {ECO:0000313|EMBL:EIJ33509.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix niv
surfeit locus 1
BD02T64_scaffold_1869_25
unknown

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21812..22474
DNA (663bp) protein (221aa)

This feature has no annotations

BD02T64_scaffold_1869_26
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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22499..23563
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003653086
Cytochrome oxidase assembly {ECO:0000313|EMBL:CDI01279.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Comp
cytochrome oxidase assembly
BD02T64_scaffold_1869_27
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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23619..24530
DNA (912bp) protein (304aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
Protoheme IX farnesyltransferase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=CYOE_THISH
protoheme IX farnesyltransferase
BD02T64_scaffold_1869_28
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24661..26037)
DNA (1377bp) protein (459aa)
Cytochrome c oxidase, subunit I n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ62_9GAMM rbh
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:EIJ33505.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea
cytochrome c oxidase, subunit i
BD02T64_scaffold_1869_29
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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26205..27857
DNA (1653bp) protein (551aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E1W3_9GAMM
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:EGV31171.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;"
autotransporter beta-domain-containing protein
BD02T64_scaffold_1869_30
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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28174..28509
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNH2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL46364.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
Displaying items 1-30 of 56 in total

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