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SR-VP_26_10_2019_C_40cm_scaffold_1900

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_1900_1
unknown

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1..642
DNA (642bp) protein (214aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1900_2
unknown

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comp(774..1388)
DNA (615bp) protein (205aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1900_3
unknown

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1937..2260
DNA (324bp) protein (108aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1900_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2543..3016
DNA (474bp) protein (158aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1900_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3049..3561
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XL20_METZD
ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase {ECO:0000313|EMBL:KCZ72333.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_1900_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3558..4556
DNA (999bp) protein (333aa)
Homoserine dehydrogenase {ECO:0000313|EMBL:KCZ72332.1}; EC=1.1.1.3 {ECO:0000313|EMBL:KCZ72332.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8W7_METEZ
SR-VP_26_10_2019_C_40cm_scaffold_1900_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4553..5569
DNA (1017bp) protein (339aa)
tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase {ECO:0000256|HAMAP-Rule:MF_01922}; EC=2.5.1.114 {ECO:0000256|HAMAP-Rule:MF_01922};; tRNA wyosine derivatives biosynthesis protein Taw2 {ECO:0000256|HAMAP-Rule:MF_01922}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Met-10+ related protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TP54_METAC
tRNA methylase Trm12p Wyeosine biosynthesis
SR-VP_26_10_2019_C_40cm_scaffold_1900_8
unknown

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6032..6235
DNA (204bp) protein (68aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1900_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(6598..7389)
DNA (792bp) protein (264aa)
Putative PAS/PAC sensor protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQK1_METZD
putative PAS/PAC sensor protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1900_10
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(7389..10616)
DNA (3228bp) protein (1076aa)
PAS domain S-box n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6U9S1_9EURY
PAS domain S-box {ECO:0000313|EMBL:EKQ54049.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium sp. Maddingley MBC34.;"
two-component hybrid sensor and regulator
SR-VP_26_10_2019_C_40cm_scaffold_1900_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10990..11754
DNA (765bp) protein (255aa)
Putative GTPase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KYZ9_METHD
putative GTPase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_1900_12
unknown

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11919..12305
DNA (387bp) protein (129aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1900_13
unknown

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comp(12898..13635)
DNA (738bp) protein (246aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1900_14

Not on your lists

comp(13679..14995)
DNA (1317bp) protein (439aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM96336.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=24516538 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Double zinc ribbon
SR-VP_26_10_2019_C_40cm_scaffold_1900_15
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14970..16502)
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q466N6_METBF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ72156.1}; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri (strain Fusaro / DSM 804).;"
SR-VP_26_10_2019_C_40cm_scaffold_1900_16
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16499..18088)
DNA (1590bp) protein (530aa)
Kelch repeat protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I4E2_CLOCE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SR-VP_26_10_2019_C_40cm_scaffold_1900_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18184..18897)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465B9_METBF
Uncharacterized protein {ECO:0000313|EMBL:KCZ71805.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_1900_18
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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19041..19895
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12U76_METBU
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1900_19
unknown

Not on your lists

20061..20207
DNA (147bp) protein (49aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1900_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(20325..21650)
DNA (1326bp) protein (442aa)
Hydrogenase maturation factor n=1 Tax=uncultured archaeon GZfos18C8 RepID=Q64DF7_9ARCH
AIR synthase related protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1900_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21640..22251)
DNA (612bp) protein (204aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12V39_METBU
SR-VP_26_10_2019_C_40cm_scaffold_1900_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(22269..23414)
DNA (1146bp) protein (382aa)
Aminotransferase, class I and II n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I9U9_METB6
class I and II aminotransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_1900_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

23695..24813
DNA (1119bp) protein (373aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KSL9_METHD
aspartate-semialdehyde dehydrogenase
SR-VP_26_10_2019_C_40cm_scaffold_1900_24
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(24814..24996)
DNA (183bp) protein (61aa)
UPF0434 protein Mbur_1284 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WH3_METBU
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 24 items

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