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RifSed_csp2_16ft_3_scaffold_3215

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_3215_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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105..1337
DNA (1233bp) protein (411aa)
S-layer-related duplication domain protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNB6_METZD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3215_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1389..1949)
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXL0_METHD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3215_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1950..2837)
DNA (888bp) protein (296aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Protease HtpX homolog Tax=Methanolobus psychrophilus R15 RepID=K4MCW8_9EURY
heat shock protein HtpX
RifSed_csp2_16ft_3_scaffold_3215_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2877..3572)
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TTP9_METAC
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:KCZ72775.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ABC transporter ATP-binding protein
RifSed_csp2_16ft_3_scaffold_3215_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(3565..4719)
DNA (1155bp) protein (385aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TTQ2_METAC
ABC transporter, permease protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3215_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4720..5796)
DNA (1077bp) protein (359aa)
Uncharacterized protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KUQ1_METHD
Uncharacterized protein {ECO:0000313|EMBL:KCZ72777.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3215_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5827..6495)
DNA (669bp) protein (223aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D8B6_METSW
Uncharacterized protein {ECO:0000313|EMBL:KCZ72778.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4Fe-4S ferredoxin
RifSed_csp2_16ft_3_scaffold_3215_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(6497..6928)
DNA (432bp) protein (144aa)
Putative flavodoxin Tax=uncultured archaeon RepID=D1JAS6_9ARCH
putative flavodoxin
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3215_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(6938..7456)
DNA (519bp) protein (173aa)
Rubrerythrin Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XP78_METZD
rubrerythrin
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3215_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7541..8980
DNA (1440bp) protein (480aa)
UPI0003D1B594 related cluster Tax=unknown RepID=UPI0003D1B594
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:KCZ71716.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
K+ transporter Trk
RifSed_csp2_16ft_3_scaffold_3215_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8985..10277)
DNA (1293bp) protein (431aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Diaminopimelate decarboxylase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAT6_METEZ
diaminopimelate decarboxylase
RifSed_csp2_16ft_3_scaffold_3215_12
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10374..11159
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Methanosarcina mazei Tuc01 RepID=M1QB33_METMZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF97403.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei Tuc01.;"
RifSed_csp2_16ft_3_scaffold_3215_13
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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11156..12049
DNA (894bp) protein (298aa)
Uncharacterized protein Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVH5_METMA
Uncharacterized protein {ECO:0000313|EMBL:KKI00115.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3215_14
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12054..12320
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVH6_METMA
Uncharacterized protein {ECO:0000313|EMBL:KGK97702.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3215_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(12322..12975)
DNA (654bp) protein (218aa)
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00351}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00351};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase Tax=Methanosarcina mazei RepID=FLPA_METMA
Fibrillarin
RifSed_csp2_16ft_3_scaffold_3215_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12977..14104)
DNA (1128bp) protein (376aa)
Isocitrate/isopropylmalate dehydrogenase {ECO:0000313|EMBL:KCZ71994.1}; EC=1.1.1.85 {ECO:0000313|EMBL:KCZ71994.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
3-isopropylmalate dehydrogenase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TU72_METAC
leuB; 3-isopropylmalate dehydrogenase
RifSed_csp2_16ft_3_scaffold_3215_17

Not on your lists

14255..14479
DNA (225bp) protein (75aa)
Hypothetical membrane protein Tax=uncultured archaeon RepID=D1JH04_9ARCH
Marine sediment metagenome DNA, contig: S06H3_C01931 {ECO:0000313|EMBL:GAI01508.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RifSed_csp2_16ft_3_scaffold_3215_18
unknown

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14615..14875
DNA (261bp) protein (87aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3215_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15016..15345)
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q468R5_METBF
Secondary thiamine-phosphate synthase enzyme {ECO:0000313|EMBL:KCZ73666.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
secondary thiamine-phosphate synthase enzyme
RifSed_csp2_16ft_3_scaffold_3215_trna_1
unknown

Not on your lists

comp(15252..15365)
DNA (114bp)
transferRNA Gly
RifSed_csp2_16ft_3_scaffold_3215_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(15427..16725)
DNA (1299bp) protein (433aa)
Putative arsenical pump membrane protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZ75_METPS
putative arsenical pump membrane protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3215_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


17096..19651
DNA (2556bp) protein (852aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02005}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02005};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02005}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E9P8_METMS
RifSed_csp2_16ft_3_scaffold_3215_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19638..20003)
DNA (366bp) protein (122aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72413.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_3215_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20101..20856
DNA (756bp) protein (252aa)
Transposase Tax=Methanolobus psychrophilus R15 RepID=K4M9W2_9EURY
Transposase, IS605 OrfB family, central region {ECO:0000313|EMBL:KCZ71763.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transposase
Displaying 24 items

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