ggKbase home page

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_1
GWA2_OD1_45_13, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

292..828
DNA (537bp) protein (179aa)
RNA polymerase ECF-subfamily sigma factor Tax=uncultured bacterium RepID=K1X2E9_9BACT
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:KKT90820.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWA2_45_13.;"
RNA polymerase ECF-type sigma factor
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_2

Not on your lists

821..1276
DNA (456bp) protein (152aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN04103.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_3
GWC1_OD1_48_8_partial, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

1281..2417
DNA (1137bp) protein (379aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU98820.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWC1_48_8.;"
Endonuclease I bin=GWC2_Ignavibacteria_56_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
peptidase S8/S53 subtilisin kexin sedolisin
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_4
GWA2_OD1_45_9, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2519..2794)
DNA (276bp) protein (92aa)
DNA-binding protein HU {ECO:0000313|EMBL:KKU15696.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWA2_45_9.;"
nucleoid DNA-binding protein bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
DNA-binding protein hu
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_5
GWA1_OD1_48_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3027..4550)
DNA (1524bp) protein (508aa)
Ribonuclease Y {ECO:0000313|EMBL:KKU91524.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWA1_48_11.;"
Ribonuclease Y bin=GWC2_OD1_43_27 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
HDIG/KH domain-containing protein
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_6
unknown

Not on your lists

4599..4781
DNA (183bp) protein (61aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_7
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

4856..5359
DNA (504bp) protein (168aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003763FCF
PaaX family transcrtiptional regulator
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_8
GWA2_OD1_45_13, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

5698..7248
DNA (1551bp) protein (517aa)
gpmI; phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000313|EMBL:KKT90825.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWA2_45_13.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_8764_c_9
R_OD1_Yanofskybacteria_39_10, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

7705..8346
DNA (642bp) protein (214aa)
integrase catalytic subunit bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
integrase catalytic subunit
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_39_10_curated
Displaying 9 items

View Taxonomy