ggKbase home page

cg2_3.0_scaffold_139_c

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg2_3.0_scaffold_139_c_1
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68..985)
DNA (918bp) protein (306aa)
GTPase EngC; K06949 ribosome biogenesis GTPase [EC:3.6.1.-] Tax=CG_Rhodof_02
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YL1_RHOFD rbh
GTPase EngC
cg2_3.0_scaffold_139_c_2
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(993..1325)
DNA (333bp) protein (111aa)
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] Tax=CG_Rhodof_02
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YL0_RHOFD rbh
transcriptional coactivator/pterin dehydratase
cg2_3.0_scaffold_139_c_3
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1341..2621)
DNA (1281bp) protein (427aa)
Ste24 endopeptidase (EC:3.4.24.84); K06013 STE24 endopeptidase [EC:3.4.24.84] Tax=CG_Rhodof_02
Ste24 endopeptidase (EC:3.4.24.84)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWS3_9BACT rbh
cg2_3.0_scaffold_139_c_4
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2629..3255
DNA (627bp) protein (209aa)
oligoribonuclease; K13288 oligoribonuclease [EC:3.1.-.-] Tax=CG_Rhodof_02
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EIG4_9BACT rbh
oligoribonuclease
cg2_3.0_scaffold_139_c_5
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3539..3805)
DNA (267bp) protein (89aa)
Tax=CG_Rhodof_02
cg2_3.0_scaffold_139_c_6
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3969..4427)
DNA (459bp) protein (153aa)
Fic family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08PQ3_STIAD rbh
filamentation induced by camp protein fic Tax=CG_Rhodof_02
filamentation induced by camp protein fic
cg2_3.0_scaffold_139_c_7
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4676..5275
DNA (600bp) protein (200aa)
Fimbrial biogenesis protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SK04_METPP rbh
fimU; fimbrial biogenesis protein Tax=CG_Rhodof_02
fimU; fimbrial biogenesis protein
cg2_3.0_scaffold_139_c_8
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5602..6366
DNA (765bp) protein (255aa)
Fimbrial protein pilin n=1 Tax=Azoarcus sp. KH32C RepID=H0PWH9_9RHOO
flmU; fimbrial protein pilin Tax=CG_Rhodof_02
flmU; fimbrial protein pilin
cg2_3.0_scaffold_139_c_9
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6374..7081
DNA (708bp) protein (236aa)
Fimbrial biogenesis protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SK06_METPP rbh
pilW; fimbrial biogenesis protein Tax=CG_Rhodof_02
pilW; fimbrial biogenesis protein
cg2_3.0_scaffold_139_c_10
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7078..8403
DNA (1326bp) protein (442aa)
Fimbrial biogenesis protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SK07_METPP rbh
pilX; fimbrial biogenesis protein Tax=CG_Rhodof_02
pilX; fimbrial biogenesis protein
cg2_3.0_scaffold_139_c_11
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8435..9562
DNA (1128bp) protein (376aa)
Fimbrial biogenesis protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SK08_METPP rbh
pilV; fimbrial biogenesis protein Tax=CG_Rhodof_02
pilV; fimbrial biogenesis protein
cg2_3.0_scaffold_139_c_12
unknown

Not on your lists

comp(9590..9742)
DNA (153bp) protein (51aa)

This feature has no annotations

cg2_3.0_scaffold_139_c_13
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9929..11350)
DNA (1422bp) protein (474aa)
GTP-binding protein HSR1-related n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CQZ9_VARPS rbh
HSR1-like GTP-binding protein Tax=CG_Rhodof_02
HSR1-like GTP-binding protein
cg2_3.0_scaffold_139_c_14
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11334..12734)
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037C6D92 rbh
hypothetical protein Tax=CG_Rhodof_02
hypothetical protein
cg2_3.0_scaffold_139_c_trna_1
unknown

Not on your lists

comp(12877..12948)
DNA (72bp)
transferRNA
cg2_3.0_scaffold_139_c_15
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12974..13702)
DNA (729bp) protein (243aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=CG_Rhodof_02
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III, epsilon subunit n=1 Tax=Polaromonas sp. CF318 RepID=J2U2R1_9BURK rbh
cg2_3.0_scaffold_139_c_16
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13754..14092)
DNA (339bp) protein (113aa)
Ferredoxin, 2Fe-2S type, ISC system n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0Y2_VARPE rbh
ferredoxin, 2fe-2S type, isc system; K04755 ferredoxin, 2Fe-2S Tax=CG_Rhodof_02
ferredoxin, 2fe-2S type, isc system
cg2_3.0_scaffold_139_c_17
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14153..16009)
DNA (1857bp) protein (619aa)
Chaperone protein HscA homolog n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WE8_RHOFD rbh
hscA; chaperone protein HscA; K04044 molecular chaperone HscA Tax=CG_Rhodof_02
hscA; chaperone protein HscA
cg2_3.0_scaffold_139_c_18
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16071..16589)
DNA (519bp) protein (173aa)
Co-chaperone protein HscB homolog n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WE9_RHOFD rbh
co-chaperone Hsc20; K04082 molecular chaperone HscB Tax=CG_Rhodof_02
co-chaperone Hsc20
cg2_3.0_scaffold_139_c_19
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16586..16909)
DNA (324bp) protein (108aa)
Iron-sulfur cluster assembly protein IscA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WF0_RHOFD rbh
iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein Tax=CG_Rhodof_02
iron-sulfur cluster assembly protein IscA
cg2_3.0_scaffold_139_c_20
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16930..17328)
DNA (399bp) protein (133aa)
FeS cluster assembly scaffold IscU n=1 Tax=Curvibacter lanceolatus RepID=UPI00037139BC rbh
scaffold protein; K04488 nitrogen fixation protein NifU and related proteins Tax=CG_Rhodof_02
scaffold protein
cg2_3.0_scaffold_139_c_21
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17341..18561)
DNA (1221bp) protein (407aa)
cysteine desulfurase IscS; K04487 cysteine desulfurase [EC:2.8.1.7] Tax=CG_Rhodof_02
Cysteine desulfurase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WF2_RHOFD rbh
cysteine desulfurase IscS
cg2_3.0_scaffold_139_c_22
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18589..19125)
DNA (537bp) protein (179aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WF3_RHOFD rbh
BadM/Rrf2 family transcriptional regulator; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor Tax=CG_Rhodof_02
BadM/Rrf2 family transcriptional regulator
cg2_3.0_scaffold_139_c_23
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19248..21368)
DNA (2121bp) protein (707aa)
UvrABC system protein B n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WF4_RHOFD rbh
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=CG_Rhodof_02
excinuclease ABC subunit B
cg2_3.0_scaffold_139_c_24
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21445..22401)
DNA (957bp) protein (319aa)
dihydrouridine synthase; K05541 tRNA-dihydrouridine synthase C [EC:1.-.-.-] Tax=CG_Rhodof_02
tRNA-dihydrouridine synthase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0X6_ACIDE rbh
dihydrouridine synthase
cg2_3.0_scaffold_139_c_25
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22552..23034
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8T2_9BURK rbh
hypothetical protein Tax=CG_Rhodof_02
hypothetical protein
cg2_3.0_scaffold_139_c_26
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23037..23486
DNA (450bp) protein (150aa)
MaoC domain protein dehydratase n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WFT3_BURSC rbh
MaoC domain-containing protein dehydratase Tax=CG_Rhodof_02
MaoC domain-containing protein dehydratase
cg2_3.0_scaffold_139_c_27
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23494..24012)
DNA (519bp) protein (173aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TA7_RHOFD rbh
NADH ubiquinone oxidoreductase, 20 kDa subunit Tax=CG_Rhodof_02
NADH ubiquinone oxidoreductase, 20 kDa subunit
cg2_3.0_scaffold_139_c_28
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24009..25610)
DNA (1602bp) protein (534aa)
NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TA6_RHOFD rbh
NADH-ubiquinone oxidoreductase subunit 49kDa Tax=CG_Rhodof_02
NADH-ubiquinone oxidoreductase subunit 49kDa
cg2_3.0_scaffold_139_c_29
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25615..27069)
DNA (1455bp) protein (485aa)
hydrogenase 4 subunit F (EC:1.6.99.5); K12141 hydrogenase-4 component F [EC:1.-.-.-] Tax=CG_Rhodof_02
hydrogenase 4 subunit F (EC:1.6.99.5)
NADH dehydrogenase (Quinone) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TA5_RHOFD rbh
Displaying items 1-30 of 61 in total

View Taxonomy