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cn_combo_scaffold_1000

Alias: BURK59_14

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Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1000_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(157..513)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0T7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98688.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
cn_combo_scaffold_1000_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(787..2253)
DNA (1467bp) protein (489aa)
Integrase family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0T8_ALIDB
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ADU98689.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus de
cn_combo_scaffold_1000_trna_5
unknown

Not on your lists

comp(2426..2499)
DNA (74bp)
transferRNA
cn_combo_scaffold_1000_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2524..3453)
DNA (930bp) protein (310aa)
dimethylallyltranstransferase (EC:2.5.1.1)
octaprenyl diphosphate synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037C1ABB
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:GAD23237.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
cn_combo_scaffold_1000_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3670..3981
DNA (312bp) protein (104aa)
UPI0003A5D8A8 related cluster n=1 Tax=unknown RepID=UPI0003A5D8A8
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidov
rplU; 50S ribosomal protein l21
cn_combo_scaffold_1000_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3999..4256
DNA (258bp) protein (86aa)
50S ribosomal protein L27 n=1 Tax=Curvibacter lanceolatus RepID=UPI00037CB51C
rpmA; 50S ribosomal protein l27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
cn_combo_scaffold_1000_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4343..5419
DNA (1077bp) protein (359aa)
GTPase Obg n=2 Tax=Acidovorax sp. (strain JS42) RepID=OBG_ACISJ
obgE; GTPase ObgE
GTPase Obg {ECO:0000255|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000255|HAMAP-Rule:MF_01454}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
cn_combo_scaffold_1000_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5474..6619
DNA (1146bp) protein (382aa)
gamma-glutamyl kinase (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000255|HAMAP-Rule:MF_00456}; EC=2.7.2.11 {ECO:0000255|HAMAP-Rule:MF_00456};; Gamma-glutamyl kinase {ECO:0000255|HAMAP-Rule:MF_00456}; Short=GK {ECO:0000255|HAMAP-Rule:MF_00456
Glutamate 5-kinase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=PROB_ACIET
cn_combo_scaffold_1000_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6639..7334)
DNA (696bp) protein (232aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hy
RNA pyrophosphohydrolase (EC:3.6.1.-)
RNA pyrophosphohydrolase n=2 Tax=Comamonas testosteroni RepID=B7WUY0_COMTE
cn_combo_scaffold_1000_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7392..9140
DNA (1749bp) protein (583aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:000025
prolyl-tRNA synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000366ED7F
prolyl-tRNA synthetase
cn_combo_scaffold_1000_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9137..9784
DNA (648bp) protein (216aa)
Lytic transglycosylase catalytic n=2 Tax=Alicycliphilus denitrificans RepID=E8U0U6_ALIDB
lytic transglycosylase catalytic subunit
Transglycosylase protein {ECO:0000313|EMBL:GAO26784.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus s
cn_combo_scaffold_1000_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9760..11094)
DNA (1335bp) protein (445aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0U7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83307.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
cn_combo_scaffold_1000_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11173..12045)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GE97_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86059.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
cn_combo_scaffold_1000_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12183..13166
DNA (984bp) protein (328aa)
Alcohol dehydrogenase zinc-binding domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1M0_9BURK
alcohol dehydrogenase zinc-binding domain-containing protein
Alcohol dehydrogenase zinc-binding domain-containing protein {ECO:0000313|EMBL:AFU45024.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovo
cn_combo_scaffold_1000_trna_4
unknown

Not on your lists

comp(13369..13441)
DNA (73bp)
transferRNA
cn_combo_scaffold_1000_trna_3
unknown

Not on your lists

comp(13451..13524)
DNA (74bp)
transferRNA
cn_combo_scaffold_1000_trna_2
unknown

Not on your lists

comp(13579..13651)
DNA (73bp)
transferRNA
cn_combo_scaffold_1000_14
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13749..15158)
DNA (1410bp) protein (470aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=535289 species="Bacteria; Pr
Glutamate--tRNA ligase n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X3X6_COMTE
gltX; glutamyl-tRNA synthetase
cn_combo_scaffold_1000_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15155..16375)
DNA (1221bp) protein (407aa)
O-succinylhomoserine sulfhydrylase (EC:2.5.1.48)
O-succinylhomoserine sulfhydrylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTB7_ALIDB
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:GAO22594.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyc
cn_combo_scaffold_1000_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16476..17981)
DNA (1506bp) protein (502aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
amidophosphoribosyltransferase (EC:2.4.2.14)
amidophosphoribosyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037AF411
cn_combo_scaffold_1000_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18009..18497)
DNA (489bp) protein (163aa)
colicin V synthesis protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368BD20
Uncharacterized protein {ECO:0000313|EMBL:GAD24685.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
colicin v production protein
cn_combo_scaffold_1000_18
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18504..19376)
DNA (873bp) protein (291aa)
Sporulation domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBI7_ACIET
sporulation domain-containing protein
Sporulation domain protein {ECO:0000313|EMBL:ACM33666.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (
cn_combo_scaffold_1000_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19397..20860)
DNA (1464bp) protein (488aa)
folylpolyglutamate synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003711853
FolC bifunctional protein {ECO:0000313|EMBL:GAD24687.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S
FolC bifunctional protein
cn_combo_scaffold_1000_20
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20896..21303
DNA (408bp) protein (136aa)
ArsC family transcriptional regulator n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B39521
ArsC family protein
ArsC family protein {ECO:0000313|EMBL:AEF89101.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
cn_combo_scaffold_1000_21
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21473..22165
DNA (693bp) protein (231aa)
17 kDa surface antigen n=2 Tax=Acidovorax RepID=A1W9F7_ACISJ
17 kDa surface antigen
17 kDa surface antigen {ECO:0000313|EMBL:ABM42882.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acid
cn_combo_scaffold_1000_22
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22253..23593
DNA (1341bp) protein (447aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase
Argininosuccinate synthase n=1 Tax=Acidovorax sp. KKS102 RepID=K0IB15_9BURK
cn_combo_scaffold_1000_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23653..24363)
DNA (711bp) protein (237aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine
7-cyano-7-deazaguanine synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C24B7
exoenzyme S synthesis protein B
cn_combo_scaffold_1000_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24360..25031)
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTA3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85756.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
cn_combo_scaffold_1000_25
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25248..25568
DNA (321bp) protein (107aa)
UPF0345 protein Q5W_2537 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN66_9BURK
UPF0345 protein Q5W_2537 {ECO:0000256|HAMAP-Rule:MF_01537}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophag
hypothetical protein
cn_combo_scaffold_1000_26
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25586..26668)
DNA (1083bp) protein (361aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-ace
udp-n-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C5547
Displaying items 1-30 of 53 in total

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