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cn_combo_scaffold_60

Alias: PEL42_4

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Displaying items 1-30 of 198 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_60_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1923)
DNA (1923bp) protein (641aa)
Cobalamin biosynthesis protein CobN and related Mg-chelatase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TLF6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKB08731.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
CobN component of cobalt chelatase involved in B12 biosynthesis
cn_combo_scaffold_60_2
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2036..3085)
DNA (1050bp) protein (350aa)
CobW GTPase involved in cobalt insertion for B12 biosynthesis n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REI3_PELHB
CobW GTPase involved in cobalt insertion for B12 biosynthesis {ECO:0000313|EMBL:KFC65106.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devos
CobW GTPase involved in cobalt insertion for B12 biosynthesis
cn_combo_scaffold_60_3
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3082..3813)
DNA (732bp) protein (244aa)
Cobalt transporter subunit CbtA n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRH8_9RHIZ
Cobalt transporter subunit CbtA (Proposed) {ECO:0000313|EMBL:KFC65107.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devos
cobalt transporter subunit CbtA
cn_combo_scaffold_60_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3840..4022)
DNA (183bp) protein (61aa)
Cobalt transporter subunit CbtB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBX7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB80571.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
cbtB; cobalt transporter, subunit CbtB
cn_combo_scaffold_60_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4350..4604
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036D4300
Uncharacterized protein {ECO:0000313|EMBL:KFL30704.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_60_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4758..5144
DNA (387bp) protein (129aa)
Membrane protein, putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REH9_PELHB
Membrane protein {ECO:0000313|EMBL:KKB08728.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_60_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5172..6359)
DNA (1188bp) protein (396aa)
UPI0003CFBFDF related cluster n=1 Tax=unknown RepID=UPI0003CFBFDF
Uncharacterized protein {ECO:0000313|EMBL:KFL30707.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_60_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6621..7547)
DNA (927bp) protein (309aa)
Periplasmic solute binding protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N7D5_9RHIZ
Zinc transporter {ECO:0000313|EMBL:KFL30708.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
znuA; High-affinity zinc uptake system protein znuA
cn_combo_scaffold_60_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7719..8555
DNA (837bp) protein (279aa)
Zinc import ATP-binding protein ZnuC {ECO:0000256|HAMAP-Rule:MF_01725}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01725};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
znuC; Zinc import ATP-binding protein znuC (EC:3.6.3.-)
ATPase component of Mn/Zn ABC-type transporter n=1 Tax=Rhizobium sp. CF142 RepID=J2LCE2_9RHIZ
cn_combo_scaffold_60_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8834..9658
DNA (825bp) protein (275aa)
ABC-type Mn2+/Zn2+ transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2B420_9RHIZ
Membrane protein {ECO:0000313|EMBL:KKC33184.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
high-affinity zinc ABC uptake transporter, ZnuB-like permase protein
cn_combo_scaffold_60_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9642..10058
DNA (417bp) protein (139aa)
Zinc uptake regulation protein ZUR n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REH3_PELHB
Fur family transcriptional regulator {ECO:0000313|EMBL:KKB82364.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia lim
zinc uptake regulation protein ZUR
cn_combo_scaffold_60_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10187..10741)
DNA (555bp) protein (185aa)
Ribosomal RNA small subunit methyltransferase D n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB06_PELHB
DNA methyltransferase {ECO:0000313|EMBL:KKB76612.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
ribosomal RNA small subunit methyltransferase D
cn_combo_scaffold_60_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10745..12472)
DNA (1728bp) protein (576aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiace
Pseudouridine synthase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJY1_XANP2
RNA-binding S4 domain-containing protein
cn_combo_scaffold_60_14
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12633..13340)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB04_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC33188.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
cn_combo_scaffold_60_15
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13426..13995)
DNA (570bp) protein (190aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal pep
Lipoprotein signal peptidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB03_PELHB
lipoprotein signal peptidase
cn_combo_scaffold_60_16
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14184..17150)
DNA (2967bp) protein (989aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
Isoleucine--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB02_PELHB
isoleucyl-tRNA synthetase
cn_combo_scaffold_60_17
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17348..18331)
DNA (984bp) protein (328aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1293439 species="Bacteria; Proteobacte
Riboflavin kinase / FMN adenylyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAF1_PELHB
riboflavin kinase/FMN adenylyltransferase
cn_combo_scaffold_60_18
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18328..19194)
DNA (867bp) protein (289aa)
HAD superfamily protein involved in N-acetyl-glucosamine catabolism n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAE9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC33192.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
HAD superfamily protein involved in N-acetyl-glucosamine catabolism
cn_combo_scaffold_60_19
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19378..20661)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAE8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC33193.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein rbh
cn_combo_scaffold_60_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20903..22330
DNA (1428bp) protein (476aa)
LuxO repressor protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAE6_PELHB
Fis family transcriptional regulator {ECO:0000313|EMBL:KKC33378.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psyc
LuxO repressor protein
cn_combo_scaffold_60_21
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22335..23264)
DNA (930bp) protein (310aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HL40_9RHIZ
Membrane protein {ECO:0000313|EMBL:KKB81410.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
cn_combo_scaffold_60_22
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23431..23622)
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC35356.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
cn_combo_scaffold_60_23
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23675..24037)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Z4Q7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC33195.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
protein of unassigned function
cn_combo_scaffold_60_24
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24217..24507
DNA (291bp) protein (97aa)
10 kDa chaperonin n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z372_9RHIZ
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=429727 speci
heat shock protein 60 family co-chaperone GroES
cn_combo_scaffold_60_25
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24566..26206
DNA (1641bp) protein (547aa)
60 kDa chaperonin n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAE1_PELHB
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1293439 spec
heat shock protein 60 family chaperone GroEL
cn_combo_scaffold_60_26
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26479..27228)
DNA (750bp) protein (250aa)
Putative membrane protein YfcA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAD9_PELHB
Membrane protein {ECO:0000313|EMBL:KKB08707.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative membrane protein YfcA
cn_combo_scaffold_60_27
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27234..28586)
DNA (1353bp) protein (451aa)
Dolichol-p-glucose synthetase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I878_AZOC5
Dolichol-P-glucose synthetase {ECO:0000313|EMBL:KKC33202.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophil
dolichol-p-glucose synthetase
cn_combo_scaffold_60_28
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28691..29398)
DNA (708bp) protein (236aa)
ATP phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00046302}; EC=2.4.2.17 {ECO:0000256|SAAS:SAAS00046302};; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicr
ATP phosphoribosyltransferase catalytic subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAD7_PELHB
ATP phosphoribosyltransferase
cn_combo_scaffold_60_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29395..30459)
DNA (1065bp) protein (355aa)
Putative ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAD6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10171.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative ATP phosphoribosyltransferase regulatory subunit
cn_combo_scaffold_60_30
unknown

Not on your lists

comp(30456..30632)
DNA (177bp) protein (59aa)

This feature has no annotations

Displaying items 1-30 of 198 in total

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