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CN-SCN_Pelagibacterium_44x

CN-SCN_Devosia_64_44
In projects: CN-SCN

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 43.89 Longest contig: 352.51 Kbp Bin length: 8.15 Mbp GC content: 64.42 %
Contigs count: 111 Features count: 8007 rRNAs count: 0 tRNAs count: 85

Genome completeness

megabin RP 51 / 55 MC: 39 BSCG 50 / 51 MC: 37 ASCG 13 / 38 MC: 11

Description

Partial double 90

Displaying items 1-50 of 111 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_14 PEL42_2
Genus: Devosia (63.72%)
317 352511 bp 64.59 44.58 90.11
cn_combo_scaffold_20 PEL42_1
Genus: Devosia (57.09%)
261 296862 bp 64.18 45.91 91.93
cn_combo_scaffold_69 PEL42_6
Genus: Devosia (73.23%)
254 265028 bp 64.68 42.44 92.50
cn_combo_scaffold_539 PEL42_40
Genus: Devosia (71.31%)
251 249947 bp 65.27 44.44 89.78
cn_combo_scaffold_49 PEL42_3
Species: Devosia chinhatensis (56.89%)
225 226737 bp 65.46 43.14 90.08
cn_combo_scaffold_325 PEL42_23
Genus: Devosia (93.69%)
222 233485 bp 65.83 43.52 91.04
cn_combo_scaffold_131 PEL42_9
Genus: Devosia (77.38%)
221 241577 bp 64.67 44.46 91.10
cn_combo_scaffold_147 PEL42_13
Genus: Devosia (61.01%)
218 232979 bp 64.16 42.51 91.91
cn_combo_scaffold_60 PEL42_4
Genus: Devosia (91.41%)
198 207465 bp 65.44 44.04 90.36
cn_combo_scaffold_63 PEL42_5
Genus: Devosia (94.18%)
189 204087 bp 65.21 44.61 88.79
cn_combo_scaffold_103 PEL42_8
Genus: Devosia (68.79%)
173 187226 bp 64.15 41.48 91.19
cn_combo_scaffold_156 PEL42_12
Order: Rhizobiales (67.84%)
171 162755 bp 64.44 45.35 89.89
cn_combo_scaffold_375 PEL42_25
Species: Devosia chinhatensis (51.53%)
163 172942 bp 64.75 41.88 87.96
cn_combo_scaffold_83 PEL42_7
Order: Rhizobiales (59.63%)
161 183886 bp 62.81 46.16 91.04
cn_combo_scaffold_224 PEL42_16
Species: Devosia chinhatensis (55.9%)
161 146906 bp 64.64 42.37 88.38
cn_combo_scaffold_197 PEL42_15
Genus: Devosia (78%)
150 130048 bp 63.85 45.87 88.80
cn_combo_scaffold_150 PEL42_10
Genus: Devosia (52.48%)
141 146903 bp 65.45 45.19 94.98
cn_combo_scaffold_740 PEL42_42
Genus: Devosia (51.43%)
140 135766 bp 62.04 72.33 87.91
cn_combo_scaffold_273 PEL42_19
Species: Devosia chinhatensis (57.35%)
136 150277 bp 64.31 39.58 92.35
cn_combo_scaffold_157 PEL42_11
Species: Devosia chinhatensis (56.72%)
134 144588 bp 64.99 42.66 92.10
cn_combo_scaffold_170 PEL42_14
Genus: Devosia (77.44%)
133 137950 bp 64.22 43.09 91.40
cn_combo_scaffold_371 PEL42_24
Genus: Devosia (69.7%)
132 144601 bp 64.50 43.07 90.02
cn_combo_scaffold_309 PEL42_21
Species: Devosia chinhatensis (65.65%)
131 123177 bp 65.92 42.46 89.41
cn_combo_scaffold_445 PEL42_28
Genus: Devosia (60.47%)
129 107761 bp 65.72 40.58 88.62
cn_combo_scaffold_260 PEL42_17
Genus: Devosia (82.03%)
128 114305 bp 63.38 43.01 87.82
cn_combo_scaffold_593 PEL42_34
Species: Devosia chinhatensis (56.67%)
120 127445 bp 65.80 43.38 90.34
cn_combo_scaffold_801 PEL42_46
Species: Devosia chinhatensis (58.97%)
117 119994 bp 65.77 43.08 89.27
cn_combo_scaffold_289 PEL42_20
Genus: Devosia (71.58%)
95 107375 bp 64.68 41.86 93.19
cn_combo_scaffold_374 PEL42_22
Genus: Devosia (77.78%)
90 93618 bp 65.38 42.38 89.42
cn_combo_scaffold_411 PEL42_26
Genus: Devosia (67.78%)
90 86753 bp 64.15 39.68 89.96
cn_combo_scaffold_644 PEL42_35
Order: Rhizobiales (58.43%)
89 83129 bp 61.38 40.08 90.86
cn_combo_scaffold_432 PEL42_27
Genus: Devosia (71.59%)
88 96150 bp 65.80 45.41 91.52
cn_combo_scaffold_283 PEL42_18
Order: Rhizobiales (81.61%)
87 109063 bp 62.57 40.55 88.86
cn_combo_scaffold_537 PEL42_29
Genus: Devosia (67.06%)
85 74063 bp 64.67 43.45 88.91
cn_combo_scaffold_725 PEL42_39
Domain: Bacteria (51.76%)
85 65066 bp 63.46 44.09 86.54
cn_combo_scaffold_563 PEL42_30
Species: Devosia chinhatensis (57.53%)
73 72112 bp 65.65 42.78 90.58
cn_combo_scaffold_605 PEL42_31
Species: Devosia chinhatensis (63.89%)
72 67712 bp 64.72 38.79 91.42
cn_combo_scaffold_632 PEL42_33
Species: Devosia chinhatensis (50.7%)
71 67104 bp 65.19 42.48 90.21
cn_combo_scaffold_653 PEL42_36
Genus: Devosia (76.81%)
69 64256 bp 65.90 43.59 91.78
cn_combo_scaffold_1255 PEL42_57
Species: Devosia chinhatensis (69.7%)
66 67800 bp 64.59 39.13 88.09
cn_combo_scaffold_711 PEL42_38
Species: Devosia chinhatensis (58.06%)
62 61241 bp 65.73 41.37 87.01
cn_combo_scaffold_837 PEL42_45
Order: Rhizobiales (72.58%)
62 56534 bp 62.40 44.08 86.99
cn_combo_scaffold_1045 PEL42_52
Genus: Devosia (78.69%)
61 64244 bp 65.84 44.98 89.99
cn_combo_scaffold_745 PEL42_41
Genus: Devosia (75%)
60 59624 bp 64.71 45.56 88.35
cn_combo_scaffold_825 PEL42_43
Genus: Devosia (67.24%)
58 55831 bp 59.52 81.38 92.52
cn_combo_scaffold_827 PEL42_44
Genus: Devosia (55.17%)
58 56030 bp 64.89 44.60 91.22
cn_combo_scaffold_620 PEL42_32
Genus: Devosia (94.74%)
57 66385 bp 64.96 41.80 91.01
cn_combo_scaffold_677 PEL42_37
Order: Rhizobiales (68.42%)
57 62794 bp 63.04 43.43 88.68
cn_combo_scaffold_1310 PEL42_60
Order: Rhizobiales (50.88%)
57 55800 bp 62.42 39.04 89.04
cn_combo_scaffold_887 PEL42_48
Genus: Devosia (62.26%)
53 56736 bp 63.38 39.28 91.83
Displaying items 1-50 of 111 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.