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CN-SCN_Pelagibacterium_44x

CN-SCN_Devosia_64_44
In projects: CN-SCN

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 43.89 Longest contig: 352.51 Kbp Bin length: 8.15 Mbp GC content: 64.42 %
Contigs count: 111 Features count: 8007 rRNAs count: 0 tRNAs count: 85

Genome completeness

megabin RP 51 / 55 MC: 39 BSCG 50 / 51 MC: 37 ASCG 13 / 38 MC: 11

Description

Partial double 90

Displaying items 1-50 of 111 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_150 PEL42_10
Genus: Devosia (52.48%)
141 146903 bp 65.45 45.19 94.98
cn_combo_scaffold_5210 PEL42_97
Species: Sinorhizobium fredii (50%)
12 11317 bp 67.13 38.78 93.50
cn_combo_scaffold_8500 PEL42_108
Genus: Devosia (100%)
27 13683 bp 62.38 45.43 93.47
cn_combo_scaffold_1079 PEL42_53
Order: Rhizobiales (76.09%)
46 45466 bp 61.30 46.43 93.38
cn_combo_scaffold_1791 PEL42_70
Genus: Devosia (100%)
27 29980 bp 65.69 43.84 93.36
cn_combo_scaffold_289 PEL42_20
Genus: Devosia (71.58%)
95 107375 bp 64.68 41.86 93.19
cn_combo_scaffold_1249 PEL42_56
Order: Rhizobiales (64.86%)
37 40227 bp 63.34 38.53 93.14
cn_combo_scaffold_9966 PEL42_111
Genus: Devosia (100%)
7 10435 bp 62.31 45.22 92.83
cn_combo_scaffold_2866 PEL42_88
Species: Xanthobacter autotrophicus (89.66%)
29 24241 bp 64.72 43.39 92.53
cn_combo_scaffold_825 PEL42_43
Genus: Devosia (67.24%)
58 55831 bp 59.52 81.38 92.52
cn_combo_scaffold_69 PEL42_6
Genus: Devosia (73.23%)
254 265028 bp 64.68 42.44 92.50
cn_combo_scaffold_1445 PEL42_66
Genus: Devosia (80.77%)
26 35642 bp 62.99 46.06 92.46
cn_combo_scaffold_5687 PEL42_99
Class: Alphaproteobacteria (78.57%)
14 12124 bp 58.59 39.37 92.44
cn_combo_scaffold_273 PEL42_19
Species: Devosia chinhatensis (57.35%)
136 150277 bp 64.31 39.58 92.35
cn_combo_scaffold_14683 PEL42_114
Species: Brevundimonas nasdae (85.71%)
7 5090 bp 67.43 67.25 92.12
cn_combo_scaffold_157 PEL42_11
Species: Devosia chinhatensis (56.72%)
134 144588 bp 64.99 42.66 92.10
cn_combo_scaffold_2231 PEL42_75
Genus: Devosia (88.89%)
45 45901 bp 64.07 44.29 91.97
cn_combo_scaffold_20 PEL42_1
Genus: Devosia (57.09%)
261 296862 bp 64.18 45.91 91.93
cn_combo_scaffold_147 PEL42_13
Genus: Devosia (61.01%)
218 232979 bp 64.16 42.51 91.91
cn_combo_scaffold_887 PEL42_48
Genus: Devosia (62.26%)
53 56736 bp 63.38 39.28 91.83
cn_combo_scaffold_653 PEL42_36
Genus: Devosia (76.81%)
69 64256 bp 65.90 43.59 91.78
cn_combo_scaffold_7571 PEL42_105
Species: Devosia chinhatensis (83.33%)
6 8145 bp 63.83 39.52 91.68
cn_combo_scaffold_432 PEL42_27
Genus: Devosia (71.59%)
88 96150 bp 65.80 45.41 91.52
cn_combo_scaffold_605 PEL42_31
Species: Devosia chinhatensis (63.89%)
72 67712 bp 64.72 38.79 91.42
cn_combo_scaffold_1418 PEL42_63
Species: Devosia chinhatensis (78.95%)
38 36375 bp 64.13 40.15 91.41
cn_combo_scaffold_170 PEL42_14
Genus: Devosia (77.44%)
133 137950 bp 64.22 43.09 91.40
cn_combo_scaffold_1158 PEL42_55
Species: Devosia chinhatensis (72.55%)
51 53571 bp 65.46 43.04 91.36
cn_combo_scaffold_1096 PEL42_54
Genus: Devosia (92.86%)
42 44773 bp 65.03 41.97 91.28
cn_combo_scaffold_827 PEL42_44
Genus: Devosia (55.17%)
58 56030 bp 64.89 44.60 91.22
cn_combo_scaffold_103 PEL42_8
Genus: Devosia (68.79%)
173 187226 bp 64.15 41.48 91.19
cn_combo_scaffold_914 PEL42_49
Genus: Devosia (79.17%)
48 52314 bp 63.10 44.95 91.16
cn_combo_scaffold_131 PEL42_9
Genus: Devosia (77.38%)
221 241577 bp 64.67 44.46 91.10
cn_combo_scaffold_2505 PEL42_81
Order: Rhizobiales (57.69%)
26 22055 bp 63.55 39.44 91.06
cn_combo_scaffold_83 PEL42_7
Order: Rhizobiales (59.63%)
161 183886 bp 62.81 46.16 91.04
cn_combo_scaffold_325 PEL42_23
Genus: Devosia (93.69%)
222 233485 bp 65.83 43.52 91.04
cn_combo_scaffold_620 PEL42_32
Genus: Devosia (94.74%)
57 66385 bp 64.96 41.80 91.01
cn_combo_scaffold_644 PEL42_35
Order: Rhizobiales (58.43%)
89 83129 bp 61.38 40.08 90.86
cn_combo_scaffold_1326 PEL42_61
Species: Devosia chinhatensis (56.25%)
32 38553 bp 64.23 41.32 90.72
cn_combo_scaffold_563 PEL42_30
Species: Devosia chinhatensis (57.53%)
73 72112 bp 65.65 42.78 90.58
cn_combo_scaffold_3984 PEL42_92
Species: Devosia chinhatensis (69.23%)
13 14657 bp 63.55 41.24 90.55
cn_combo_scaffold_2466 PEL42_78
Species: Devosia chinhatensis (61.9%)
21 22364 bp 65.31 44.18 90.45
cn_combo_scaffold_2541 PEL42_84
Order: Rhizobiales (79.17%)
24 25487 bp 61.01 50.62 90.45
cn_combo_scaffold_4076 PEL42_93
Class: Alphaproteobacteria (62.5%)
16 14367 bp 60.20 37.42 90.39
cn_combo_scaffold_877 PEL42_47
Genus: Devosia (100%)
52 53926 bp 65.29 43.42 90.37
cn_combo_scaffold_60 PEL42_4
Genus: Devosia (91.41%)
198 207465 bp 65.44 44.04 90.36
cn_combo_scaffold_593 PEL42_34
Species: Devosia chinhatensis (56.67%)
120 127445 bp 65.80 43.38 90.34
cn_combo_scaffold_632 PEL42_33
Species: Devosia chinhatensis (50.7%)
71 67104 bp 65.19 42.48 90.21
cn_combo_scaffold_14 PEL42_2
Genus: Devosia (63.72%)
317 352511 bp 64.59 44.58 90.11
cn_combo_scaffold_2239 PEL42_73
Genus: Devosia (52%)
25 24460 bp 61.40 43.92 90.09
cn_combo_scaffold_49 PEL42_3
Species: Devosia chinhatensis (56.89%)
225 226737 bp 65.46 43.14 90.08
Displaying items 1-50 of 111 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.