ggKbase home page

cn_combo_scaffold_2239

Alias: PEL42_73

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2239_1
unknown

Not on your lists

comp(92..187)
DNA (96bp) protein (32aa)

This feature has no annotations

cn_combo_scaffold_2239_2
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

266..1312
DNA (1047bp) protein (349aa)
AAA-4 family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8S4_MESCW
ATPase AAA
AAA-4 family protein {ECO:0000313|EMBL:ADV12972.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri
cn_combo_scaffold_2239_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1375..1803)
DNA (429bp) protein (143aa)
Transcriptional regulator, MerR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9H6_STAND
MerR family transcriptional regulator {ECO:0000313|EMBL:KKB77455.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sol
MerR family transcriptional regulator
cn_combo_scaffold_2239_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1871..4138
DNA (2268bp) protein (756aa)
Heavy metal translocating P-type ATPase n=1 Tax=Nitratireductor indicus C115 RepID=K2MXA0_9RHIZ
ATPase {ECO:0000313|EMBL:KKB85132.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
heavy metal translocating P-type ATPase
cn_combo_scaffold_2239_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4300..4626
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL29692.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cn_combo_scaffold_2239_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4675..5391
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAS0_PELHB
Membrane protein {ECO:0000313|EMBL:KFL29691.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_2239_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5401..6180
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAS1_PELHB
Membrane protein {ECO:0000313|EMBL:KFL29690.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_2239_8
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6223..7284
DNA (1062bp) protein (354aa)
Acyltransferase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDV0_PELHB
acyltransferase
Acyltransferase family protein {ECO:0000313|EMBL:AEQ53862.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibac
cn_combo_scaffold_2239_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7332..8153
DNA (822bp) protein (274aa)
Flagellin protein FlaA, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IS75_RHOCS
Uncharacterized protein {ECO:0000313|EMBL:KKB10381.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
flaA; flagellin protein FlaA
cn_combo_scaffold_2239_10
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8189..8902)
DNA (714bp) protein (238aa)
Uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=D5CKG9_ENTCC
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM87975.1}; TaxID=1420012 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pne
cn_combo_scaffold_2239_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8916..10082)
DNA (1167bp) protein (389aa)
Membrane-bound lytic murein transglycosylase B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCL8_PELHB
Lytic transglycosylase {ECO:0000313|EMBL:KKB12330.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
membrane-bound lytic murein transglycosylase B
cn_combo_scaffold_2239_12
Providencia rettgeri, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10079..10951)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Providencia rettgeri DSM 1131 RepID=D4BYT0_PRORE
Uncharacterized protein {ECO:0000313|EMBL:EFE53637.1}; TaxID=521000 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia re
hypothetical protein
cn_combo_scaffold_2239_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11351..12175)
DNA (825bp) protein (275aa)
Lysozyme {ECO:0000256|RuleBase:RU361176}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU361176};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;"
Phage lysin, glycosyl hydrolase, family 25 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8F9_PELHB
phage lysin, glycosyl hydrolase, family 25
cn_combo_scaffold_2239_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12172..13896)
DNA (1725bp) protein (575aa)
Cell division protein FtsI (Peptidoglycan synthetase) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG01_PELHB
Cell division protein {ECO:0000313|EMBL:KKB84684.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
cell division protein FtsI (peptidoglycan synthetase)
cn_combo_scaffold_2239_15
unknown

Not on your lists

comp(13969..14322)
DNA (354bp) protein (118aa)

This feature has no annotations

cn_combo_scaffold_2239_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14455..15627)
DNA (1173bp) protein (391aa)
nickel transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000289AB36
High-affinity nickel-transporter {ECO:0000313|EMBL:KFC64628.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
high-affinity nickel-transporter
cn_combo_scaffold_2239_17
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15755..16033
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BRK3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM72205.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor
hypothetical protein
cn_combo_scaffold_2239_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16046..17365
DNA (1320bp) protein (440aa)
major facilitator transporter n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000363318F
Major facilitator transporter {ECO:0000313|EMBL:KFL29688.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.
major facilitator transporter
cn_combo_scaffold_2239_19
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17362..18063
DNA (702bp) protein (234aa)
Putative membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAS4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29687.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_2239_20
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18154..19077
DNA (924bp) protein (308aa)
Zinc ABC transporter, periplasmic-binding protein ZnuA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REH6_PELHB
zinc ABC transporter, periplasmic-binding protein ZnuA
Zinc ABC transporter, periplasmic-binding protein ZnuA {ECO:0000313|EMBL:AEQ53908.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacter
cn_combo_scaffold_2239_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19399..19794
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL30602.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cn_combo_scaffold_2239_22
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19916..20953
DNA (1038bp) protein (346aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Ph
DNA-cytosine methyltransferase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HHF8_9RHIZ
putative site-specific DNA methylase
cn_combo_scaffold_2239_23
Streptomyces sp. MBRL 601, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20998..21366
DNA (369bp) protein (123aa)
UPI0003CEEF4F related cluster n=1 Tax=unknown RepID=UPI0003CEEF4F
DNA mismatch repair protein Vsr {ECO:0000313|EMBL:KIX74633.1}; TaxID=1592330 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MBRL 601.;
DNA mismatch repair protein Vsr
cn_combo_scaffold_2239_24
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21433..22314)
DNA (882bp) protein (294aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL31229.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cn_combo_scaffold_2239_25
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22624..24369
DNA (1746bp) protein (582aa)
UPI0003CE887F related cluster n=1 Tax=unknown RepID=UPI0003CE887F
hypothetical protein Tax=GWD2_Desulfuromonadales_61_12_curated
hypothetical protein
Displaying 25 items

View Taxonomy