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cn_combo_scaffold_1445

Alias: PEL42_66

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1445_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

274..1329
DNA (1056bp) protein (352aa)
Phosphate starvation-inducible ATPase PhoH with RNA binding motif protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8I7_PELHB
Phosphate starvation-inducible ATPase PhoH with RNA binding motif protein {ECO:0000313|EMBL:KFC68736.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobi
phosphate starvation-inducible ATPase PhoH with RNA binding motif protein
cn_combo_scaffold_1445_2
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1268..1783
DNA (516bp) protein (172aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1116389 species="Bacteria; P
Endoribonuclease YbeY n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8I8_PELHB
metal-dependent hydrolase
cn_combo_scaffold_1445_3
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1830..2888
DNA (1059bp) protein (353aa)
Magnesium and cobalt efflux protein CorC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8I9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC31564.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
magnesium and cobalt efflux protein CorC rbh
cn_combo_scaffold_1445_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3135..3701)
DNA (567bp) protein (189aa)
NifU protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8I1_PELHB
NifU protein {ECO:0000313|EMBL:KFC68733.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
NifU protein
cn_combo_scaffold_1445_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3796..4266)
DNA (471bp) protein (157aa)
Universal stress protein A n=2 Tax=Labrenzia RepID=U7GHS3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB76172.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
universal stress protein UspA-related nucleotide-binding protein
cn_combo_scaffold_1445_6
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4289..5320)
DNA (1032bp) protein (344aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {EC
Tryptophan--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H9_PELHB
tryptophanyl-tRNA synthetase
cn_combo_scaffold_1445_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5385..6947)
DNA (1563bp) protein (521aa)
Proposed peptidoglycan lipid II flippase MurJ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H8_PELHB
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychro
proposed peptidoglycan lipid II flippase MurJ
cn_combo_scaffold_1445_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7101..9896)
DNA (2796bp) protein (932aa)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H7_PELHB
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII
(protein-PII) uridylyltransferase
cn_combo_scaffold_1445_9
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9877..12585)
DNA (2709bp) protein (903aa)
DNA mismatch repair protein MutS n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H6_PELHB
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
DNA mismatch repair protein MutS
cn_combo_scaffold_1445_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12687..13958)
DNA (1272bp) protein (424aa)
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:KKB07866.1}; EC=2.5.1.49 {ECO:0000313|EMBL:KKB07866.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobi
O-acetylhomoserine/O-acetylserine sulfhydrylase (EC:2.5.1.49)
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZRP5_9SPHN
cn_combo_scaffold_1445_11
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14072..15694)
DNA (1623bp) protein (541aa)
Beta-xylosidase n=1 Tax=Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) RepID=C9SRQ6_VERA1
Beta-xylosidase {ECO:0000313|EMBL:KKC31536.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
beta-xylosidase
cn_combo_scaffold_1445_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15870..17177)
DNA (1308bp) protein (436aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=429727 species="Bacteria; Proteob
Xylose isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H1_PELHB
xylose isomerase
cn_combo_scaffold_1445_13
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17174..18637)
DNA (1464bp) protein (488aa)
Xylulose kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H2_PELHB
Xylulose kinase {ECO:0000313|EMBL:KKB78778.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
xylulose kinase rbh
cn_combo_scaffold_1445_14
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18728..19771)
DNA (1044bp) protein (348aa)
Putative xylose regulator from LacI family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8H3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC31539.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative xylose regulator from LacI family rbh
cn_combo_scaffold_1445_15
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19891..20901
DNA (1011bp) protein (337aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1502724 species="Bacteria; Proteobacteria;
Aldose 1-epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGX9_PELHB
aldose 1-epimerase
cn_combo_scaffold_1445_16
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20918..21613
DNA (696bp) protein (232aa)
DNA-binding protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XGL5_SORCE
DNA-binding protein {ECO:0000313|EMBL:KKC37750.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.
DNA-binding protein
cn_combo_scaffold_1445_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21617..23026)
DNA (1410bp) protein (470aa)
XRE family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2J8K4_9PROT
XRE family transcriptional regulator {ECO:0000313|EMBL:KFL25572.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
XRE family transcriptional regulator rbh
cn_combo_scaffold_1445_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23173..23400
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JM24_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFL29996.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cn_combo_scaffold_1445_19
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23481..24764
DNA (1284bp) protein (428aa)
Isocitrate lyase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K235_9PROT
Isocitrate lyase {ECO:0000313|EMBL:KFL25574.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
isocitrate lyase
cn_combo_scaffold_1445_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24859..25476)
DNA (618bp) protein (206aa)
cold-shock protein n=1 Tax=Cupriavidus sp. WS RepID=UPI0003701398
Uncharacterized protein {ECO:0000313|EMBL:KKC31542.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
cn_combo_scaffold_1445_21
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25597..26505)
DNA (909bp) protein (303aa)
Mg(2+) chelatase family protein / ComM-related protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8G1_PELHB
ATPase AAA {ECO:0000313|EMBL:KKB82028.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
Mg(2+) chelatase family protein / ComM-related protein
cn_combo_scaffold_1445_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26526..28076
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036355E0
recombinase rbh
Recombinase {ECO:0000313|EMBL:ABE61044.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain
cn_combo_scaffold_1445_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28665..30497
DNA (1833bp) protein (611aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVK8_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD07752.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
cn_combo_scaffold_1445_24
Brucella ceti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30646..31932
DNA (1287bp) protein (429aa)
DNA-cytosine methyltransferase (EC:2.1.1.37) rbh
Cytosine-specific methyltransferase n=20 Tax=Brucella RepID=C9U1I4_BRUPB
Modification methylase HgiDI {ECO:0000313|EMBL:EEH13881.1}; TaxID=595497 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella ceti str. Cudo.
cn_combo_scaffold_1445_25
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32003..34543)
DNA (2541bp) protein (847aa)
Uncharacterized protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G183_ACICJ
Uncharacterized protein {ECO:0000313|EMBL:KEZ17017.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoi
hypothetical protein rbh
cn_combo_scaffold_1445_26
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34536..35642)
DNA (1107bp) protein (369aa)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UV04_PSEUP
adenine-specific DNA-methyltransferase Tax=CG_Hydro_01
adenine-specific DNA-methyltransferase
Displaying 26 items

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