ggKbase home page

cn_combo_scaffold_620

Alias: PEL42_32

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_620_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(395..4099)
DNA (3705bp) protein (1235aa)
Ribonucleotide-diphosphate reductase subunit alpha {ECO:0000313|EMBL:KKB09649.1}; EC=1.17.4.1 {ECO:0000313|EMBL:KKB09649.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizo
Ribonucleotide reductase of class II (Coenzyme B12-dependent) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB77_PELHB
ribonucleotide reductase of class II (coenzyme B12-dependent)
cn_combo_scaffold_620_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4626..5027
DNA (402bp) protein (134aa)
NADH dehydrogenase {ECO:0000313|EMBL:KKB09648.1}; EC=1.6.99.3 {ECO:0000313|EMBL:KKB09648.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devos
putative NADH-ubiquinone oxidoreductase subunit B17.2 (Complex I-B17.2) (CI-B17.2) (EC:1.6.5.3 1.6.99.3)
NADH dehydrogenase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CKX0_9RHOB
cn_combo_scaffold_620_3
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5045..5449
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC5_9RHIZ
Glycosyl hydrolase family 5 {ECO:0000313|EMBL:KKC38752.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihi
retrovirus-related POL polyprotein
cn_combo_scaffold_620_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5456..6244)
DNA (789bp) protein (263aa)
Aminoglycoside 3'-phosphotransferase, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQF0_RHOCS
Uncharacterized protein {ECO:0000313|EMBL:KKB09646.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
butA; aminoglycoside 3'-phosphotransferase
cn_combo_scaffold_620_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6241..6873)
DNA (633bp) protein (211aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transf
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB74_PELHB
leucyl/phenylalanyl-tRNA--protein transferase
cn_combo_scaffold_620_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6905..8251)
DNA (1347bp) protein (449aa)
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KKB83692.1}; EC=6.4.1.2 {ECO:0000313|EMBL:KKB83692.1};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; D
Biotin carboxylase of acetyl-CoA carboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB73_PELHB
biotin carboxylase of acetyl-CoA carboxylase
cn_combo_scaffold_620_7
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8262..8753)
DNA (492bp) protein (164aa)
Biotin carboxyl carrier protein of acetyl-CoA carboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB72_PELHB
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KKC38750.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudin
biotin carboxyl carrier protein of acetyl-CoA carboxylase
cn_combo_scaffold_620_8
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8788..9225)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B53C48
3-dehydroquinate dehydratase
cn_combo_scaffold_620_9
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9507..10367)
DNA (861bp) protein (287aa)
Putative outer membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB69_PELHB
Putative outer membrane protein {ECO:0000313|EMBL:KFC72555.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.
putative outer membrane protein
cn_combo_scaffold_620_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10524..11678
DNA (1155bp) protein (385aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB68_PELHB
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000313|EMBL:KKC31112.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devos
aspartate/tyrosine/aromatic aminotransferase
cn_combo_scaffold_620_11
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11686..12192
DNA (507bp) protein (169aa)
Acetyltranferase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZD2_9GAMM
Acetyltranferase {ECO:0000313|EMBL:EED37317.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp.
hypothetical protein
cn_combo_scaffold_620_12
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12280..12879
DNA (600bp) protein (200aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB83169.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
cn_combo_scaffold_620_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13252..15903)
DNA (2652bp) protein (884aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1502724 species="Bacteria; Proteobacteria; Al
Ribonuclease E n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAL2_PELHB
cytoplasmic axial filament protein CafA and ribonuclease G
cn_combo_scaffold_620_14
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16420..17808
DNA (1389bp) protein (463aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAL5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC31140.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
N-acetylmuramoyl-L-alanine amidase
cn_combo_scaffold_620_15
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17986..20487
DNA (2502bp) protein (834aa)
Multimodular transpeptidase-transglycosylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAL3_PELHB
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:KFC72551.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Dev
multimodular transpeptidase-transglycosylase
cn_combo_scaffold_620_16
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20720..21679
DNA (960bp) protein (320aa)
Peptide chain release factor 2 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJF8_RHITR
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae
prfB; peptide chain release factor 2
cn_combo_scaffold_620_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21716..22054)
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC72377.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
cn_combo_scaffold_620_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22051..25806)
DNA (3756bp) protein (1252aa)
B12-dependent methionine synthase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3I683_9RHIZ
Methionine synthase {ECO:0000313|EMBL:KKB09513.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
metH; B12-dependent methionine synthase
cn_combo_scaffold_620_19
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26155..27117
DNA (963bp) protein (321aa)
Rare lipoprotein A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9N5_PELHB
Rare lipoprotein A {ECO:0000313|EMBL:KFC72379.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Rare lipoprotein A precursor
cn_combo_scaffold_620_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27151..28302
DNA (1152bp) protein (384aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9N6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34787.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
D-alanyl-D-alanine carboxypeptidase
cn_combo_scaffold_620_21
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28323..29009
DNA (687bp) protein (229aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1116389 species="Bacteria; Proteobacteria; Alp
Thymidylate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9N7_PELHB
thymidylate kinase
cn_combo_scaffold_620_22
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29006..30031
DNA (1026bp) protein (342aa)
DNA polymerase III delta prime subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9N8_PELHB
DNA polymerase III delta prime subunit {ECO:0000313|EMBL:KFC72382.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia s
DNA polymerase III delta prime subunit rbh
cn_combo_scaffold_620_23
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


30028..31578
DNA (1551bp) protein (517aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:
metG; methionine--tRNA ligase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Nitratireductor indicus C115 RepID=K2PRL5_9RHIZ
cn_combo_scaffold_620_24
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31580..32359
DNA (780bp) protein (260aa)
Putative deoxyribonuclease YcfH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9P0_PELHB
LuxR family transcriptional regulator {ECO:0000313|EMBL:KKB82925.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia li
putative deoxyribonuclease YcfH
cn_combo_scaffold_620_25
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32363..33199
DNA (837bp) protein (279aa)
Metal-dependent hydrolases of the beta-lactamase superfamily I, PhnP protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9P1_PELHB
PhnP {ECO:0000313|EMBL:KKB83490.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
metal-dependent hydrolase
cn_combo_scaffold_620_26
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33319..34320)
DNA (1002bp) protein (334aa)
F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X6_PELHB
Methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:KKB76477.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devos
F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase
cn_combo_scaffold_620_27
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34401..35207)
DNA (807bp) protein (269aa)
Vitamin B12 ABC transporter, ATPase component BtuD n=1 Tax=Leifsonia rubra CMS 76R RepID=S7XLE3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KKC34781.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
cobalamin/Fe3+-siderophore ABC transporter ATPase
cn_combo_scaffold_620_28
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35204..36217)
DNA (1014bp) protein (338aa)
ABC transporter (Iron.B12.siderophore.hemin) , permease component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X4_PELHB
Iron ABC transporter permease {ECO:0000313|EMBL:KKC34780.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophil
ABC transporter permease
cn_combo_scaffold_620_29
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36214..37158)
DNA (945bp) protein (315aa)
ABC transporter (Iron.B12.siderophore.hemin) , periplasmic substrate-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X3_PELHB
Iron transporter {ECO:0000313|EMBL:KKC34892.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
ABC transporter substrate-binding protein
cn_combo_scaffold_620_30
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37163..37990)
DNA (828bp) protein (276aa)
Coenzyme F420-0:L-glutamate ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7X2_PELHB
F420-dependent oxidoreductase {ECO:0000313|EMBL:KKC34779.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophil
coenzyme F420-0:L-glutamate ligase rbh
Displaying items 1-30 of 57 in total

View Taxonomy