ggKbase home page

cn_combo_scaffold_131

Alias: PEL42_9

Search features with annotation key words

Displaying items 1-30 of 221 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_131_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..303)
DNA (303bp) protein (101aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012};; TaxID=429727 species="Bacteria; Proteobacteri
ilvD-1; dihydroxy-acid dehydratase 1 (EC:4.2.1.9)
dihydroxy-acid dehydratase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003792A93
cn_combo_scaffold_131_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(454..858)
DNA (405bp) protein (135aa)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=1 Tax=uncultured bacterium HF130_12L15 RepID=E0XPP9_9BACT
RNA-binding protein S4 {ECO:0000313|EMBL:KFL29902.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
cn_combo_scaffold_131_3
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(862..3843)
DNA (2982bp) protein (994aa)
ATP-dependent DNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ6_PELHB
Helicase {ECO:0000313|EMBL:KKB85213.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ATP-dependent DNA helicase
cn_combo_scaffold_131_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4697..5551)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC66054.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
cn_combo_scaffold_131_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5699..5983
DNA (285bp) protein (95aa)
50S ribosomal protein L28 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ0_PELHB
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
50S ribosomal protein L28
cn_combo_scaffold_131_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6323..6958
DNA (636bp) protein (212aa)
Putative preQ0 transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY9_PELHB
Membrane protein {ECO:0000313|EMBL:KKB07586.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative preQ0 transporter
cn_combo_scaffold_131_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7020..8012)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34293.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
cn_combo_scaffold_131_8
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8009..9898)
DNA (1890bp) protein (630aa)
Aerobic cobaltochelatase CobT subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY6_PELHB
Cobalt chelatase {ECO:0000313|EMBL:KKC34294.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
aerobic cobaltochelatase CobT subunit
cn_combo_scaffold_131_9
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10049..11032)
DNA (984bp) protein (328aa)
Aerobic cobaltochelatase CobS subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY5_PELHB
Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KKC35788.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epid
aerobic cobaltochelatase CobS subunit
cn_combo_scaffold_131_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11121..11747)
DNA (627bp) protein (209aa)
Putative with DnaJ-like domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB83631.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
putative with DnaJ-like domain-containing protein
cn_combo_scaffold_131_11
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11790..12053
DNA (264bp) protein (88aa)
BolA family transcriptional regulator n=2 Tax=Labrenzia RepID=U7FQ34_9RHOB
BolA family transcriptional regulator {ECO:0000313|EMBL:KKC35790.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia ep
BolA-like protein
cn_combo_scaffold_131_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12159..13274)
DNA (1116bp) protein (372aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=46914 species="Bacteria;
3-dehydroquinate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY1_PELHB
3-dehydroquinate synthase
cn_combo_scaffold_131_13
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13278..13862)
DNA (585bp) protein (195aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1116389 species="Bacteria; Proteobacteria; Alphap
Shikimate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY0_PELHB
shikimate kinase
cn_combo_scaffold_131_14
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14008..14211
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REX9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77681.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
cn_combo_scaffold_131_15
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14208..15125
DNA (918bp) protein (306aa)
Tyrosine recombinase XerD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG6_PELHB
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS
tyrosine recombinase XerD
cn_combo_scaffold_131_16
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15263..16216
DNA (954bp) protein (318aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG5_PELHB
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
acetyl-CoA carboxyl transferase subunit alpha rbh
cn_combo_scaffold_131_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16514..17605
DNA (1092bp) protein (364aa)
Putative exported protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG4_PELHB
Putative exported protein {ECO:0000313|EMBL:KFC66041.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
cn_combo_scaffold_131_18
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17679..18308
DNA (630bp) protein (210aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC34303.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
cn_combo_scaffold_131_19
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18503..21289)
DNA (2787bp) protein (929aa)
preprotein translocase subunit SecA n=1 Tax=Kaistia granuli RepID=UPI0003736A62
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
secA; preprotein translocase subunit SecA
cn_combo_scaffold_131_20
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21676..22563
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371520A
Uncharacterized protein {ECO:0000313|EMBL:KKC35798.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
foldase protein PrsA precursor
cn_combo_scaffold_131_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22760..23992
DNA (1233bp) protein (411aa)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG1_PELHB
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sour
glutamate N-acetyltransferase / N-acetylglutamate synthase rbh
cn_combo_scaffold_131_22
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23994..24740
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641FCD
Uncharacterized protein {ECO:0000313|EMBL:KKC34306.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
cn_combo_scaffold_131_23
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24737..25144
DNA (408bp) protein (136aa)
5-methyl-dCTP pyrophosphohydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG3_PELHB
NTP pyrophosphohydrolase {ECO:0000313|EMBL:KKB10941.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
5-methyl-dCTP pyrophosphohydrolase
cn_combo_scaffold_131_24
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25179..25367
DNA (189bp) protein (63aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC34321.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
cn_combo_scaffold_131_25
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25372..26856)
DNA (1485bp) protein (495aa)
Putative Zn-dependent protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF09_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77672.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative Zn-dependent protease
cn_combo_scaffold_131_26
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26853..27575)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF10_PELHB
Nuclease (SNase domain protein) {ECO:0000313|EMBL:KKC34319.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychroph
hypothetical protein
cn_combo_scaffold_131_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27810..28196
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035DF962
Uncharacterized protein {ECO:0000313|EMBL:KFC61266.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
cn_combo_scaffold_131_28
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28244..29176
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003691831
signal peptide protein rbh
Signal peptide protein {ECO:0000313|EMBL:AJY44464.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica
cn_combo_scaffold_131_trna_1
unknown

Not on your lists

29265..29338
DNA (74bp)
transferRNA
cn_combo_scaffold_131_29
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29455..30501
DNA (1047bp) protein (349aa)
Response regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBL2_PELHB
Transcriptional regulator {ECO:0000313|EMBL:KKC33303.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
Response regulator
Displaying items 1-30 of 221 in total

View Taxonomy