ggKbase home page

cn_combo_scaffold_103

Alias: PEL42_8

Search features with annotation key words

Displaying items 1-30 of 173 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_103_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..124
DNA (123bp) protein (41aa)
GguC protein {ECO:0000313|EMBL:KKB10380.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cn_combo_scaffold_103_2
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(253..645)
DNA (393bp) protein (131aa)
Integrase catalytic region n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MI52_9RHIZ
Integrase catalytic region {ECO:0000313|EMBL:EKF16822.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireduct
Mobile element protein
cn_combo_scaffold_103_3
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(688..1563)
DNA (876bp) protein (292aa)
Dihydrodipicolinate synthase n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JQR5_9RHIZ
Dihydrodipicolinate synthase {ECO:0000313|EMBL:CDX23350.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobiu
dihydrodipicolinate synthetase
cn_combo_scaffold_103_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1560..1928)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E0196
Endoribonuclease, L-PSP family protein {ECO:0000313|EMBL:EYR79417.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp.
hypothetical protein
cn_combo_scaffold_103_5
Agrobacterium sp. IP I-671, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1940..3199)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036632D4
Putative D-amino acid dehydrogenase {ECO:0000313|EMBL:AAL73201.1}; TaxID=173261 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agroba
dadA; D-amino acid dehydrogenase
cn_combo_scaffold_103_6
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3226..4002)
DNA (777bp) protein (259aa)
Amino acid ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DJ43_9RHIZ
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EJT01729.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium g
artM2; arginine transport ATP-binding protein ArtM
cn_combo_scaffold_103_7
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4013..4669)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EC3D4
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AJD51239.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospir
cn_combo_scaffold_103_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4682..5344)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003715693
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJL51099.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteoba
amino acid ABC transporter permease
cn_combo_scaffold_103_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5368..6201)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000368F691
ABC transporter substrate-binding protein
Putative substrate-binding component of ABC transporter {ECO:0000313|EMBL:ACP22627.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensife
cn_combo_scaffold_103_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6303..7097
DNA (795bp) protein (265aa)
Transcriptional regulator, IclR family n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRN2_TISMK
kipR; transcriptional regulator, IclR family
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AFK55420.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Ti
cn_combo_scaffold_103_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7451..7585)
DNA (135bp) protein (45aa)
Putative transposase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E9M4_BRASB
Transposase {ECO:0000313|EMBL:KKB06928.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transposase
cn_combo_scaffold_103_12
Acinetobacter sp. ANC 3880, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7874..8272)
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Acinetobacter RepID=N9J7Y5_ACIBA
Uncharacterized protein {ECO:0000313|EMBL:ENX56257.1}; TaxID=1217701 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp.
hypothetical protein
cn_combo_scaffold_103_13
unknown

Not on your lists

8399..8668
DNA (270bp) protein (90aa)

This feature has no annotations

cn_combo_scaffold_103_14
unknown

Not on your lists

8668..9771
DNA (1104bp) protein (368aa)
Peptidoglycan glycosyltransferase (Penicillin-binding protein 1A) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8H6_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:CPR17824.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp.
peptidoglycan glycosyltransferase (penicillin-binding protein 1A)
cn_combo_scaffold_103_15
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(9989..11032)
DNA (1044bp) protein (348aa)
ABC transporter related protein {ECO:0000313|EMBL:ADH64570.1}; EC=3.6.3.30 {ECO:0000313|EMBL:ADH64570.1};; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiot
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036B222C
ABC transporter-like protein
cn_combo_scaffold_103_16
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11029..12645)
DNA (1617bp) protein (539aa)
ABC transporter, permease protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9YBQ8_KETVW
sfuB; ABC transporter permease rbh
ABC transporter, permease protein {ECO:0000313|EMBL:AEM42810.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="K
cn_combo_scaffold_103_17
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12653..13639)
DNA (987bp) protein (329aa)
Ferric iron ABC transporter iron-binding protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5X8_KETVY
Fe3+ ABC transporter periplasmic protein rbh
Ferric iron ABC transporter iron-binding protein {ECO:0000313|EMBL:ADO44372.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigeni
cn_combo_scaffold_103_18
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13945..14604)
DNA (660bp) protein (220aa)
Two component LuxR family transcriptional regulator n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5X7_KETVY
putative CitB, response regulator containing a CheY-like protein receiver domain protein
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:ADO44371.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicig
cn_combo_scaffold_103_19
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14601..15965)
DNA (1365bp) protein (455aa)
two-component sensor histidine kinase protein (EC:2.7.3.-) rbh
Probable two-component sensor histidine kinase protein {ECO:0000313|EMBL:AEM42807.1}; EC=2.7.3.- {ECO:0000313|EMBL:AEM42807.1};; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rh
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000364EA48
cn_combo_scaffold_103_20
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16365..16736
DNA (372bp) protein (124aa)
extradiol dioxygenase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C51A8
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KFC62428.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sour
extradiol dioxygenase
cn_combo_scaffold_103_21
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16797..17258)
DNA (462bp) protein (154aa)
Xylose isomerase {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511}; EC=5.3.1.5 {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511};; TaxID=1125979 species="Bacteria; Proteobact
putative xylose isomerase (EC:5.3.1.5)
Xylose isomerase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F2U6_9RHIZ
cn_combo_scaffold_103_22
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17255..17641)
DNA (387bp) protein (129aa)
Xylose isomerase {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511}; EC=5.3.1.5 {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511};; TaxID=1125979 species="Bacteria; Proteobact
putative xylose isomerase (EC:5.3.1.5)
Xylose isomerase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F2U6_9RHIZ
cn_combo_scaffold_103_23
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17971..18810
DNA (840bp) protein (280aa)
Iron transporter n=3 Tax=Rhodobacter capsulatus RepID=V8ADR0_RHOCA
Iron transporter {ECO:0000313|EMBL:ETE52541.1}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus Y
iron permease
cn_combo_scaffold_103_24
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18814..20001
DNA (1188bp) protein (396aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RR50_RHORT
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABC23395.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillu
cn_combo_scaffold_103_25
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20006..21337
DNA (1332bp) protein (444aa)
Tat-translocated enzyme n=2 Tax=Rhodospirillum rubrum RepID=G2TH29_RHORU
Tat-translocated enzyme rbh
Tat-translocated enzyme {ECO:0000313|EMBL:ABC23396.1}; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" so
cn_combo_scaffold_103_26
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21353..22171
DNA (819bp) protein (273aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RR48_RHORT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC23397.1}; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" so
cn_combo_scaffold_103_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22357..23061
DNA (705bp) protein (235aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1S3_VARPS
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACS22843.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
cn_combo_scaffold_103_28
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23229..24422
DNA (1194bp) protein (398aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YHQ9_MOBAS
Putative acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:EAS49521.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;"
putative acyl-CoA transferase
cn_combo_scaffold_103_29
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24419..25192
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EAR52119.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EAR52119.1};; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; O
Enoyl-CoA hydratase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CHC0_9RHOB
unsaturated acyl-CoA hydratase
cn_combo_scaffold_103_30
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25258..26325
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037ABE03
Taurine-binding periplasmic protein TauA {ECO:0000313|EMBL:KEC80535.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Si
ABC transporter, periplasmic substrate-binding protein
Displaying items 1-30 of 173 in total

View Taxonomy