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cn_combo_scaffold_63

Alias: PEL42_5

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Displaying items 1-30 of 189 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_63_1
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(188..892)
DNA (705bp) protein (235aa)
Transcriptional regulator, Crp/Fnr family n=6 Tax=Rhizobium meliloti RepID=F6BYW0_SINMB
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KKC31320.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
CarD family transcriptional regulator rbh
cn_combo_scaffold_63_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(988..1893)
DNA (906bp) protein (302aa)
Putative nitrite reductase NirV n=1 Tax=uncultured bacterium 1062 RepID=B8R8W6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKC31319.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
nirV; NirV periplasmic nitrate reductase
cn_combo_scaffold_63_3
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1963..3090)
DNA (1128bp) protein (376aa)
nirK; nitrite reductase, copper-containing (EC:1.7.2.1)
Copper-containing nitrite reductase n=1 Tax=Brucella abortus 65/110 RepID=N7AG84_BRUAO
Nitrite reductase {ECO:0000313|EMBL:KKC31318.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
cn_combo_scaffold_63_4
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3314..3817
DNA (504bp) protein (168aa)
Pseudoazurin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRZ5_9RHIZ
Pseudoazurin {ECO:0000313|EMBL:KKC31317.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
pseudoazurin
cn_combo_scaffold_63_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3948..4415
DNA (468bp) protein (156aa)
SEC-independent protein translocase protein TatC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTM3_9RHIZ
Hemoglobin-like protein {ECO:0000313|EMBL:KFC71264.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
preprotein translocase subunit TatC
cn_combo_scaffold_63_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4611..5972
DNA (1362bp) protein (454aa)
UPI0003CE63FA related cluster n=1 Tax=unknown RepID=UPI0003CE63FA
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KFL30509.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;
FAD dependent oxidoreductase
cn_combo_scaffold_63_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6072..7985
DNA (1914bp) protein (638aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhizobium sp. RepID=L0NBU2_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KKB11024.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
methyl-accepting chemotaxis protein
cn_combo_scaffold_63_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8150..8584
DNA (435bp) protein (145aa)
Transposase IS200 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VDS3_9RHIZ
Transposase IS200 {ECO:0000313|EMBL:ENN89217.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhi
putative IS200/IS605 family transposase, IS200 group
cn_combo_scaffold_63_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8736..9764
DNA (1029bp) protein (343aa)
Putative ABC-type transport system, periplasmic component/surface lipoprotein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HM22_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB08940.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
ABC transporter substrate-binding protein
cn_combo_scaffold_63_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9980..11569
DNA (1590bp) protein (530aa)
ATPase component of uncharacterized ABC-type transporter n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V1I1_9RHIZ
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL31557.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
Ribose import ATP-binding protein RbsA
cn_combo_scaffold_63_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11757..12839
DNA (1083bp) protein (361aa)
ABC-type uncharacterized transport system, permease component n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HLP1_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KKB81122.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
sugar ABC transporter permease
cn_combo_scaffold_63_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12842..13786
DNA (945bp) protein (315aa)
Putative ABC-type transport system, permease component n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VHH1_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KKB08938.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
sugar ABC transporter permease
cn_combo_scaffold_63_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13814..15091
DNA (1278bp) protein (426aa)
Cytosine deaminase {ECO:0000313|EMBL:KFL31554.1}; EC=3.5.4.1 {ECO:0000313|EMBL:KFL31554.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
cytosine deaminase (EC:3.5.4.1)
Cytosine deaminase-like metal-dependent hydrolase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C6E7_9RHIZ
cn_combo_scaffold_63_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15368..16231
DNA (864bp) protein (288aa)
Flagellar motor rotation protein MotA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Q0_PELHB
Flagellar motor protein MotA {ECO:0000313|EMBL:KKB86583.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17
flagellar motor rotation protein MotA rbh
cn_combo_scaffold_63_15
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16248..17168
DNA (921bp) protein (307aa)
Flagellar motor rotation protein MotB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9Q1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32835.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
flagellar motor rotation protein MotB
cn_combo_scaffold_63_16
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17459..18028)
DNA (570bp) protein (190aa)
Elongation factor P n=1 Tax=Rhodobacter sp. SW2 RepID=C8RWV7_9RHOB
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiace
efp; translation elongation factor P
cn_combo_scaffold_63_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18155..19213
DNA (1059bp) protein (353aa)
lysine--tRNA ligase (EC:6.1.1.6)
Lysyl-tRNA synthetase {ECO:0000313|EMBL:KFL30472.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Lysine--tRNA ligase id=2611954 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
cn_combo_scaffold_63_18
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19394..20437
DNA (1044bp) protein (348aa)
Putative L-lysine 2,3-aminomutase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZ81_9RHIZ
Lysine 2,3-aminomutase {ECO:0000313|EMBL:KKC32854.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
L-lysine 2,3-aminomutase (KAM) (LAM)
cn_combo_scaffold_63_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20440..21474
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037D12EF
Oxidoreductase {ECO:0000313|EMBL:KKB08226.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
malate dehydrogenase rbh
cn_combo_scaffold_63_20
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21542..22225)
DNA (684bp) protein (228aa)
membrane protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B449D6
Uncharacterized protein {ECO:0000313|EMBL:KKB13279.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
cn_combo_scaffold_63_21
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22495..23151)
DNA (657bp) protein (219aa)
Bacterial regulatory protein, luxR family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QM50_9CAUL
Bacterial regulatory protein, luxR family protein {ECO:0000313|EMBL:EGF93622.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;
response regulator
cn_combo_scaffold_63_22
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23148..25406)
DNA (2259bp) protein (753aa)
Putative sensor histidine kinase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT49_TISMK
yxjM; putative sensor histidine kinase
Putative sensor histidine kinase {ECO:0000313|EMBL:AFK55937.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrell
cn_combo_scaffold_63_23
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25461..26237)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003608AA8
Malonic semialdehyde reductase {ECO:0000313|EMBL:KKB77196.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae D
short-chain dehydrogenase/reductase SDR
cn_combo_scaffold_63_24
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26357..27652
DNA (1296bp) protein (432aa)
hemolysin secretion protein D n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B37396
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KFC62487.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devo
macA; macrolide-specific efflux protein MacA
cn_combo_scaffold_63_25
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27656..29605
DNA (1950bp) protein (650aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria;
ABC transporter related protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TN60_TISMK
macB; ABC transporter
cn_combo_scaffold_63_26
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29990..31870
DNA (1881bp) protein (627aa)
Outer membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP0_PELHB
Surface antigen (D15) {ECO:0000313|EMBL:KKC32852.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
cn_combo_scaffold_63_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31870..36204
DNA (4335bp) protein (1445aa)
Gramicidin S biosynthesis grst protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP1_PELHB
Gramicidin S biosynthesis grst protein {ECO:0000313|EMBL:KFC62489.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia s
gramicidin S biosynthesis grst protein rbh
cn_combo_scaffold_63_28
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36213..36830
DNA (618bp) protein (206aa)
Thiopurine S-methyltransferase superfamily n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBY6_9CAUL
Thiopurine S-methyltransferase superfamily {ECO:0000313|EMBL:EDX80023.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" sourc
methyltransferase type 11
cn_combo_scaffold_63_29
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36827..37060
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB84319.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
cn_combo_scaffold_63_30
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37312..37920
DNA (609bp) protein (203aa)
Outer membrane lipoprotein omp19 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6B8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC40855.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
outer membrane lipoprotein omp19
Displaying items 1-30 of 189 in total

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