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cn_combo_scaffold_677

Alias: PEL42_37

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_677_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..608)
DNA (606bp) protein (202aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC44_PELHB
DNA-directed RNA polymerase subunit beta
cn_combo_scaffold_677_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1013..1387)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5D9_9RHIZ
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavi
rplL; 50S ribosomal protein L7/L12
cn_combo_scaffold_677_3
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1450..1971)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP4_PELHB
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS
50S ribosomal protein L10
cn_combo_scaffold_677_4
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2280..2972)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=RL1_METPB
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;
rplA; 50S ribosomal protein L1
cn_combo_scaffold_677_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2978..3406)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP6_PELHB
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
50S ribosomal protein L11
cn_combo_scaffold_677_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3498..4028)
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCP7_PELHB
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiale
transcription antitermination protein NusG
cn_combo_scaffold_677_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4070..4264)
DNA (195bp) protein (65aa)
preprotein translocase subunit SecE n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036F975A
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psyc
preprotein translocase subunit SecE
cn_combo_scaffold_677_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4521..4802
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC62816.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
cn_combo_scaffold_677_9
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4935..5108
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q1D7_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGE82469.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
cn_combo_scaffold_677_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5167..5310
DNA (144bp) protein (48aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL29873.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cn_combo_scaffold_677_trna_1
unknown

Not on your lists

comp(6382..6454)
DNA (73bp)
transferRNA
cn_combo_scaffold_677_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6543..6935)
DNA (393bp) protein (131aa)
membrane protein n=1 Tax=Xanthobacteraceae RepID=UPI0003674091
Inner membrane protein {ECO:0000313|EMBL:KFC62813.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
inner membrane protein
cn_combo_scaffold_677_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7011..9668)
DNA (2658bp) protein (886aa)
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPK1_9RHIZ
Histidine kinase {ECO:0000313|EMBL:KKB08377.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_677_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9823..10737)
DNA (915bp) protein (305aa)
Putative 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000313|EMBL:KFC66769.1}; EC=4.2.1.41 {ECO:0000313|EMBL:KFC66769.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobi
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Rhizobium sp. CF080 RepID=J2JCH1_9RHIZ
Dihydrodipicolinate synthase
cn_combo_scaffold_677_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10730..11431)
DNA (702bp) protein (234aa)
GntR family transcriptional regulator n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WMW3_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:KFC65811.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC
Transcriptional regulator, GntR family
cn_combo_scaffold_677_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11462..11893)
DNA (432bp) protein (144aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UBQ9_METS4
3-dehydroquinate dehydratase
cn_combo_scaffold_677_16
Pyramidobacter piscolens, Pyramidobacter, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

12025..12507
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4I9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFB90792.1}; TaxID=352165 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Pyramidobacter.;" source="Pyramidobacter piscolens W54
cn_combo_scaffold_677_17
Vibrio ezurae, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12520..14007
DNA (1488bp) protein (496aa)
Tripartite tricarboxylate transporter family protein n=1 Tax=Vibrio ezurae NBRC 102218 RepID=U3AES6_9VIBR
Tripartite tricarboxylate transporter family protein {ECO:0000313|EMBL:GAD78426.1}; TaxID=1219080 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="V
hypothetical protein
cn_combo_scaffold_677_18
Bacillus clausii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14020..14985
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Bacillus clausii (strain KSM-K16) RepID=Q5WBX1_BACSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD66139.1}; TaxID=66692 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus clausii (strain KSM-K16).;"
cn_combo_scaffold_677_19
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15000..15920
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YB32_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV42791.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wads
acetamidase/formamidase family protein
cn_combo_scaffold_677_20
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15947..16636
DNA (690bp) protein (230aa)
Putative siderophore biosynthesis protein n=1 Tax=Rhodobacter sp. AKP1 RepID=L1KGY3_9RHOB
Putative siderophore biosynthesis protein {ECO:0000313|EMBL:EKX59658.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source=
dimethylmenaquinone methyltransferase
cn_combo_scaffold_677_21
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16720..17766)
DNA (1047bp) protein (349aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9R0M6_9RHOB
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:EPX85483.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ru
aglK2; alpha-glucoside transport ATP-binding protein AglK
cn_combo_scaffold_677_22
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17776..18831)
DNA (1056bp) protein (352aa)
ABC transporter permease n=1 Tax=Wenxinia marina RepID=UPI000381CF21
Wenxma_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ69777.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenx
araQ3; L-arabinose transport system permease AraQ
cn_combo_scaffold_677_23
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18828..19838)
DNA (1011bp) protein (337aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9QVN7_9RHOB
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:EPX85481.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rub
yurN4; ABC transporter permease YurN
cn_combo_scaffold_677_24
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19841..21115)
DNA (1275bp) protein (425aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9S5L8_9RHOB
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:EPX85480.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacterace
extracellular solute-binding protein
cn_combo_scaffold_677_25
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21132..23639)
DNA (2508bp) protein (836aa)
UPI0003D00A43 related cluster n=1 Tax=unknown RepID=UPI0003D00A43
Uncharacterized protein {ECO:0000313|EMBL:ESZ21488.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
cn_combo_scaffold_677_26
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23716..24708)
DNA (993bp) protein (331aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00037CE126
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EHS49627.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rh
transcriptional regulator
cn_combo_scaffold_677_27
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24939..26684
DNA (1746bp) protein (582aa)
dihydroxy-acid dehydratase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036118E1
Dihydroxy-acid and 6-phosphogluconate dehydratase {ECO:0000313|EMBL:EHS49632.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacteriu
hypothetical protein rbh
cn_combo_scaffold_677_28
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26697..27479
DNA (783bp) protein (261aa)
2-dehydro-3-deoxyglucarate aldolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035EFF24
2-dehydro-3-deoxyglucarate aldolase {ECO:0000313|EMBL:KFG68258.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvir
hypothetical protein
cn_combo_scaffold_677_29
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27479..28360
DNA (882bp) protein (294aa)
gluconolactonase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035C3AFC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS88385.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum li
Displaying items 1-30 of 57 in total

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