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cn_combo_scaffold_309

Alias: PEL42_21

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Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_309_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(299..439)
DNA (141bp) protein (47aa)
Flp pilus assembly protein, pilin Flp {ECO:0000313|EMBL:KFC61350.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp
cn_combo_scaffold_309_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(510..1043)
DNA (534bp) protein (178aa)
Periplasmic protein thiol--disulfide oxidoreductase DsbE n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N394_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB07785.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
cn_combo_scaffold_309_3
unknown

Not on your lists

comp(1043..1189)
DNA (147bp) protein (49aa)

This feature has no annotations

cn_combo_scaffold_309_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1186..1950)
DNA (765bp) protein (255aa)
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R708_PELHB
Heme transporter HemC {ECO:0000313|EMBL:KKB07784.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cytochrome c-type biogenesis protein CcmC heme lyase for CcmE
cn_combo_scaffold_309_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1996..2661)
DNA (666bp) protein (222aa)
Heme exporter protein B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R709_PELHB
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
cn_combo_scaffold_309_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2658..3284)
DNA (627bp) protein (209aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; Ta
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F3F87B
heme exporter protein CcmA
cn_combo_scaffold_309_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3439..6192
DNA (2754bp) protein (918aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=429727 species="Bacteria; Proteobacteria; Alph
Aconitate hydratase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R711_PELHB
aconitate hydratase
cn_combo_scaffold_309_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6594..7337
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08311.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_309_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7607..7990
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30201.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_309_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7987..8487
DNA (501bp) protein (167aa)
GNAT family acetyltransferase (EC:2.3.1.-)
GNAT family acetyltransferase n=3 Tax=Rhodobacter capsulatus RepID=V8GZ20_RHOCA
Uncharacterized protein {ECO:0000313|EMBL:KFL30200.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cn_combo_scaffold_309_11

Not on your lists

comp(8423..8977)
DNA (555bp) protein (185aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BI48_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48456.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
grpB; UPF0157 protein
cn_combo_scaffold_309_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8982..9479)
DNA (498bp) protein (166aa)
pat; phosphinothricin N-acetyltransferase Pat (EC:2.3.1.183)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNH4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:KKB07779.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cn_combo_scaffold_309_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9578..10303)
DNA (726bp) protein (242aa)
Membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y8_PELHB
Membrane protein {ECO:0000313|EMBL:KFL30197.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein rbh
cn_combo_scaffold_309_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10505..11044
DNA (540bp) protein (180aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=429727 species="Ba
2'-5' RNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y7_PELHB
2'-5' RNA ligase
cn_combo_scaffold_309_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11261..11782
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08310.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_309_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11872..12375
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07776.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_309_17
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12649..13857
DNA (1209bp) protein (403aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y4_PELHB
ribosomal RNA large subunit methyltransferase N
cn_combo_scaffold_309_18
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13960..14808)
DNA (849bp) protein (283aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rul
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y1_PELHB
protein involved in catabolism of external DNA
cn_combo_scaffold_309_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14828..15475)
DNA (648bp) protein (216aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Y0_PELHB
Threonine transporter RhtB {ECO:0000313|EMBL:KKB07774.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;
lysine exporter protein LysE/YggA
cn_combo_scaffold_309_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15569..16033)
DNA (465bp) protein (155aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JA14_AGRRK
AsnC family transcriptional regulator {ECO:0000313|EMBL:KKB07773.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chi
transcriptional regulator
cn_combo_scaffold_309_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16162..17385
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase
Argininosuccinate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X9_PELHB
argininosuccinate synthase
cn_combo_scaffold_309_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17566..18144
DNA (579bp) protein (193aa)
chloramphenicol phosphotransferase n=1 Tax=Rhizobium loti RepID=UPI00036BEFB0
Uncharacterized protein {ECO:0000313|EMBL:KKB07771.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
chloramphenicol phosphotransferase family protein
cn_combo_scaffold_309_23
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18225..20351
DNA (2127bp) protein (709aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07770.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
cn_combo_scaffold_309_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20619..22409
DNA (1791bp) protein (597aa)
GTP-binding protein TypA/BipA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6X5_PELHB
GTP-binding protein TypA {ECO:0000313|EMBL:KKB78972.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
GTP-binding protein TypA
cn_combo_scaffold_309_25
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22549..23169
DNA (621bp) protein (207aa)
SNARE associated Golgi protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9VX54_METEP
Alkaline phosphatase {ECO:0000313|EMBL:KKB07766.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_309_26
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23224..24117
DNA (894bp) protein (298aa)
Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9P3_PELHB
iron(III) dicitrate transport system, periplasmic iron-binding protein FecB rbh
Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB {ECO:0000313|EMBL:AEQ51450.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicro
cn_combo_scaffold_309_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24418..24720
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P574_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KKB07765.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_309_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24701..25036
DNA (336bp) protein (112aa)
UPF0235 protein RHSP_37470 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UAT2_9RHIZ
UPF0235 protein VE26_13990 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatens
hypothetical protein
cn_combo_scaffold_309_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25199..27313
DNA (2115bp) protein (705aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6W4_PELHB
pyrophosphate-energized proton pump
cn_combo_scaffold_309_30
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27466..27897)
DNA (432bp) protein (144aa)
MarR family transcriptional regulator n=2 Tax=Rhodospirillum rubrum RepID=G2T703_RHORU
MarR family transcriptional regulator {ECO:0000313|EMBL:KKC31674.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psy
MarR family transcriptional regulator
Displaying items 1-30 of 131 in total

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