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cn_combo_scaffold_745

Alias: PEL42_41

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_745_1
unknown

Not on your lists

comp(90..218)
DNA (129bp) protein (43aa)

This feature has no annotations

cn_combo_scaffold_745_2
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(242..1006)
DNA (765bp) protein (255aa)
Arginine/ornithine ABC transporter, ATP-binding protein, putative n=1 Tax=Burkholderia sp. SJ98 RepID=K8R5F6_9BURK
Arginine/ornithine ABC transporter, ATP-binding protein, putative {ECO:0000313|EMBL:EKS68102.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae;
ABC-type histidine transport system, ATPase component
cn_combo_scaffold_745_3
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1003..1890)
DNA (888bp) protein (296aa)
agmatinase (EC:3.5.3.11)
UPI0003CE1BDD related cluster n=1 Tax=unknown RepID=UPI0003CE1BDD
Agmatinase {ECO:0000313|EMBL:ESW79948.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;
cn_combo_scaffold_745_4
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2250..3770)
DNA (1521bp) protein (507aa)
UPI0003CEB7E1 related cluster n=1 Tax=unknown RepID=UPI0003CEB7E1
Aldehyde dehydrogenase {ECO:0000313|EMBL:ESY20160.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
putative Aldehyde dehydrogenase Aldedh
cn_combo_scaffold_745_5
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3773..5026)
DNA (1254bp) protein (418aa)
aminotransferase (EC:2.6.1.-) rbh
UPI0003D051FA related cluster n=1 Tax=unknown RepID=UPI0003D051FA
Aminotransferase {ECO:0000313|EMBL:ESW91766.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC26
cn_combo_scaffold_745_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5031..5426)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H9I3_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJB07013.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
hypothetical protein
cn_combo_scaffold_745_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5624..7237)
DNA (1614bp) protein (538aa)
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NJV3_RHILT
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:EJB07017.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobia
acetolactate synthase, large subunit
cn_combo_scaffold_745_8
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7234..8295)
DNA (1062bp) protein (354aa)
UPI0003D0622A related cluster n=1 Tax=unknown RepID=UPI0003D0622A
Uncharacterized protein {ECO:0000313|EMBL:ESZ26525.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
M20/DapE family protein YgeY/putative selenium metabolism hydrolase
cn_combo_scaffold_745_9
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8878..9168
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FEA8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX66554.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
Transcriptional regulators
cn_combo_scaffold_745_10
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9494..10954
DNA (1461bp) protein (487aa)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KJZ22461.1}; EC=1.2.1.16 {ECO:0000313|EMBL:KJZ22461.1};; TaxID=379347 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rh
succinate semialdehyde dehydrogenase (EC:1.2.1.16) rbh
Succinate semialdehyde dehydrogenase n=1 Tax=Ruegeria mobilis F1926 RepID=R0DWF3_9RHOB
cn_combo_scaffold_745_11
unknown

Not on your lists

comp(11160..11309)
DNA (150bp) protein (50aa)

This feature has no annotations

cn_combo_scaffold_745_trna_2
unknown

Not on your lists

comp(11427..11513)
DNA (87bp)
transferRNA
cn_combo_scaffold_745_12
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11756..12079
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037CC66E
Uncharacterized protein {ECO:0000313|EMBL:KKC31903.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
cn_combo_scaffold_745_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12119..12775
DNA (657bp) protein (219aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
methionine sulfoxide reductase A n=1 Tax=Afipia birgiae RepID=UPI000313B8AF
cn_combo_scaffold_745_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12840..13211
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VML7_CAUST
Uncharacterized protein {ECO:0000313|EMBL:KFC61343.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
cn_combo_scaffold_745_15
unknown

Not on your lists

13656..13910
DNA (255bp) protein (85aa)

This feature has no annotations

cn_combo_scaffold_745_16
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13907..15643
DNA (1737bp) protein (579aa)
Putative chemotaxis transducer n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R699_PELHB
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KFC71827.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
putative chemotaxis transducer
cn_combo_scaffold_745_17
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15660..16163)
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Ochrobactrum intermedium RepID=M5JNV3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT48833.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium
hypothetical protein
cn_combo_scaffold_745_trna_1
unknown

Not on your lists

comp(16282..16354)
DNA (73bp)
transferRNA
cn_combo_scaffold_745_18
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16494..16895)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JST6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB81912.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
cn_combo_scaffold_745_19
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17086..18390
DNA (1305bp) protein (435aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=AROA_MESSB
cn_combo_scaffold_745_20
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18387..19031
DNA (645bp) protein (215aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:
Cytidylate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9C5_PELHB
cytidylate kinase
cn_combo_scaffold_745_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19200..20903
DNA (1704bp) protein (568aa)
30S ribosomal protein S1 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9C6_PELHB
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
30S ribosomal protein S1 rbh
cn_combo_scaffold_745_22
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21229..21747
DNA (519bp) protein (173aa)
GCN5-related N-acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9D4_PELHB
GCN5 family acetyltransferase {ECO:0000313|EMBL:KKB76143.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 1
N-acetyltransferase GCN5
cn_combo_scaffold_745_23
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21776..22720
DNA (945bp) protein (315aa)
Putative protease IV transmembrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9D5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC31560.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative protease IV transmembrane protein
cn_combo_scaffold_745_24
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22756..23037
DNA (282bp) protein (94aa)
Integration host factor subunit beta n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9D6_PELHB
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=728005 species="Bacteria; Proteobacteria
Integration host factor beta subunit
cn_combo_scaffold_745_25
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23109..23471
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9D8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC68762.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
cn_combo_scaffold_745_26
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23481..24128
DNA (648bp) protein (216aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9D9_PELHB
phosphoribosylanthranilate isomerase
cn_combo_scaffold_745_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24175..25386
DNA (1212bp) protein (404aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyp
Tryptophan synthase beta chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9E0_PELHB
tryptophan synthase subunit beta
cn_combo_scaffold_745_28
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25390..26214
DNA (825bp) protein (275aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1293439 species="
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CUY3_9RHIZ
Displaying items 1-30 of 60 in total

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