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cn_combo_scaffold_375

Alias: PEL42_25

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Displaying items 1-30 of 163 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_375_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289..2346
DNA (2058bp) protein (686aa)
RNA polymerase sigma factor RpoD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS2_PELHB
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphom
RNA polymerase sigma factor RpoD
cn_combo_scaffold_375_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2357..2647
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034CF271
Uncharacterized protein {ECO:0000313|EMBL:KKB10093.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cn_combo_scaffold_375_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2601..2948
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80072.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
cn_combo_scaffold_375_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3023..3244
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80071.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
cn_combo_scaffold_375_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3347..5038)
DNA (1692bp) protein (564aa)
Putative chemotaxis transducer n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R699_PELHB
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KFC71827.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
putative chemotaxis transducer
cn_combo_scaffold_375_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5047..5394)
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB11026.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
cn_combo_scaffold_375_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5474..6514)
DNA (1041bp) protein (347aa)
Putative oxidoreductase, LLM family n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SKY0_RHOMR
Luciferase {ECO:0000313|EMBL:KKB10089.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
luciferase-like monooxygenase
cn_combo_scaffold_375_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6642..7328)
DNA (687bp) protein (229aa)
Putative membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGR8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80068.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
cn_combo_scaffold_375_9
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7355..8020
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7SXI1_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EZP46031.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophom
hypothetical protein
cn_combo_scaffold_375_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8097..8477)
DNA (381bp) protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC31293.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
cn_combo_scaffold_375_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8758..10899)
DNA (2142bp) protein (714aa)
Ferric siderophore transport system, periplasmic binding protein TonB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGR6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10087.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ferric siderophore transport system, periplasmic binding protein TonB
cn_combo_scaffold_375_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11221..11640
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGR4_PELHB
Secondary thiamine-phosphate synthase {ECO:0000313|EMBL:KKB10419.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chi
hypothetical protein
cn_combo_scaffold_375_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11643..12473
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGR3_PELHB
Membrane protein {ECO:0000313|EMBL:KKB10418.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_375_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12733..13449)
DNA (717bp) protein (239aa)
Putative 26 kDa periplasmic immunogenic protein n=1 Tax=uncultured bacterium RepID=L7RXN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKB10417.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_375_15
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13668..14819
DNA (1152bp) protein (384aa)
Fumarylacetoacetate (FAA) hydrolase family protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VHE3_9RHIZ
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:KKB80064.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
fumarylacetoacetate hydrolase family protein
cn_combo_scaffold_375_16
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14868..16307
DNA (1440bp) protein (480aa)
Aldehyde dehydrogenase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GX4_MESSB
Aldehyde dehydrogenase {ECO:0000313|EMBL:KKB80063.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
aldehyde dehydrogenase
cn_combo_scaffold_375_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16377..16799)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AGK8_RHIRD
Membrane protein {ECO:0000313|EMBL:KFL29082.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_375_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16796..17332)
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=F0L7V7_AGRSH
Membrane protein {ECO:0000313|EMBL:KFL29081.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
cn_combo_scaffold_375_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17369..18895)
DNA (1527bp) protein (509aa)
aminoglycoside phosphotransferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000379FC0F
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KKB10919.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojens
Putative homoserine kinase type II (Protein kinase fold)
cn_combo_scaffold_375_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18948..19649)
DNA (702bp) protein (234aa)
Phosphate regulon transcriptional regulatory protein PhoB (SphR) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R7_PELHB
Chemotaxis protein CheY {ECO:0000313|EMBL:KKB10069.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phosphate regulon transcriptional regulatory protein PhoB (SphR)
cn_combo_scaffold_375_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19820..20530)
DNA (711bp) protein (237aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R6_PELHB
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
phosphate transport system regulatory protein PhoU
cn_combo_scaffold_375_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20544..21383)
DNA (840bp) protein (280aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-tran
Phosphate transport ATP-binding protein PstB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8R5_PELHB
phosphate transport ATP-binding protein PstB
cn_combo_scaffold_375_23
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21395..22750)
DNA (1356bp) protein (452aa)
Phosphate ABC transporter membrane protein 2, PhoT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DN4_MESSB
High frequency lysogenization protein HflD {ECO:0000313|EMBL:KKB10066.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosi
phosphate ABC transporter permease
cn_combo_scaffold_375_24
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22747..24126)
DNA (1380bp) protein (460aa)
Phosphate ABC transporter membrane protein 1, PhoT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DN3_MESSB
ABC transporter permease {ECO:0000313|EMBL:KKB10065.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phosphate ABC transporter permease
cn_combo_scaffold_375_25
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24198..25217)
DNA (1020bp) protein (340aa)
Phosphate ABC transporter substrate-binding protein, PhoT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DN2_MESSB
Phosphonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB10064.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sou
phosphate ABC transporter substrate-binding protein
cn_combo_scaffold_375_26
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25523..26371)
DNA (849bp) protein (283aa)
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family n=1 Tax=Rhizobium sp. CF142 RepID=J2L243_9RHIZ
IclR family transcriptional regulator {ECO:0000313|EMBL:KKB10063.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chi
pcaR; Pca regulon regulatory protein PcaR
cn_combo_scaffold_375_trna_1
unknown

Not on your lists

26664..26737
DNA (74bp)
transferRNA
cn_combo_scaffold_375_27
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26990..28846
DNA (1857bp) protein (619aa)
Feruloyl-CoA synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R890_PELHB
feruloyl-CoA synthetase
Feruloyl-CoA synthetase {ECO:0000313|EMBL:AEQ52334.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium
cn_combo_scaffold_375_28
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28848..30089
DNA (1242bp) protein (414aa)
Acetyl-CoA acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R889_PELHB
acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AEQ52333.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacte
cn_combo_scaffold_375_29
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30089..30850
DNA (762bp) protein (254aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R888_PELHB
3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AEQ52332.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagiba
Displaying items 1-30 of 163 in total

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