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cn_combo_scaffold_1025

Alias: PEL42_51

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1025_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..463
DNA (462bp) protein (154aa)
30S ribosomal protein S4 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE79_PELHB
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis
30S ribosomal protein S4
cn_combo_scaffold_1025_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(518..1909)
DNA (1392bp) protein (464aa)
BacA, bacteroid development protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE78_PELHB
Microcin B17 transporter {ECO:0000313|EMBL:KKB10509.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
BacA, bacteroid development protein
cn_combo_scaffold_1025_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2075..2941
DNA (867bp) protein (289aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE77_PELHB
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source=
tRNA(cytosine32)-2-thiocytidine synthetase
cn_combo_scaffold_1025_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2946..3758
DNA (813bp) protein (271aa)
Inositol monophosphatase and related sulfite synthesis enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE76_PELHB
Inositol monophosphatase {ECO:0000313|EMBL:KKB09863.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
inositol monophosphatase
cn_combo_scaffold_1025_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3873..4187
DNA (315bp) protein (105aa)
ArsR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LJK6_9RHIZ
ArsR family transcriptional regulator {ECO:0000313|EMBL:KKB09860.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chi
ArsR family transcriptional regulator
cn_combo_scaffold_1025_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4184..4528
DNA (345bp) protein (115aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PTR5_RHIE6
Uncharacterized protein {ECO:0000313|EMBL:KKB09859.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_1025_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4570..5205
DNA (636bp) protein (212aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
clpP; ATP-dependent endopeptidase clp, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL29_9RHIZ
cn_combo_scaffold_1025_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5202..6458)
DNA (1257bp) protein (419aa)
MFS family multidrug efflux protein, similarity to bicyclomycin resistance protein Bcr n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE75_PELHB
Major facilitator transporter {ECO:0000313|EMBL:KKB09857.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
MFS family multidrug efflux protein
cn_combo_scaffold_1025_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6566..7783)
DNA (1218bp) protein (406aa)
MFS permease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE74_PELHB
MFS transporter {ECO:0000313|EMBL:KKB10374.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
MFS permease
cn_combo_scaffold_1025_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7937..8272)
DNA (336bp) protein (112aa)
Glutaredoxin n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE73_PELHB
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative monothiol glutaredoxin ycf64-like protein
cn_combo_scaffold_1025_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8331..8987)
DNA (657bp) protein (219aa)
Putative HAD superfamily hydrolase n=1 Tax=Rhizobium sp. CF122 RepID=J2RBU8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB79853.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
HAD superfamily hydrolase protein
cn_combo_scaffold_1025_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8984..9295)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE72_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10371.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_1025_13
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9304..9537)
DNA (234bp) protein (78aa)
Regulator of penicillin binding proteins and beta lactamase transcription n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J477_POLGS
ATP-binding protein {ECO:0000313|EMBL:KKC36701.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.
regulator of penicillin binding proteins and beta lactamase transcription
cn_combo_scaffold_1025_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9648..10244)
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09854.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cn_combo_scaffold_1025_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10329..12554)
DNA (2226bp) protein (742aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formyl
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
phosphoribosylglycinamide synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A0D3A
cn_combo_scaffold_1025_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12569..13201)
DNA (633bp) protein (211aa)
Integral membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE69_PELHB
Integral membrane protein {ECO:0000313|EMBL:CDP50434.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
cn_combo_scaffold_1025_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13213..13881)
DNA (669bp) protein (223aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:000025
purQ; phosphoribosylformylglycinamidine synthase 1 (EC:6.3.5.3)
phosphoribosylformylglycinamidine synthase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E1CAC
cn_combo_scaffold_1025_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14039..15106)
DNA (1068bp) protein (356aa)
Mll2248 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IU2_RHILO
Acyltransferase {ECO:0000313|EMBL:KKB09851.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_1025_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15361..15603)
DNA (243bp) protein (81aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formyl
Phosphoribosylformylglycinamidine synthase n=2 Tax=Labrenzia RepID=U7G738_9RHOB
phosphoribosylformylglycinamidine synthase subunit PurS
cn_combo_scaffold_1025_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15621..16385)
DNA (765bp) protein (255aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};;
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE65_PELHB
phosphoribosylaminoimidazole-succinocarboxamide synthase
cn_combo_scaffold_1025_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16592..16915
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3ST27_NITWN
Uncharacterized protein {ECO:0000313|EMBL:KKB09848.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_1025_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16982..17275)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX99_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB09847.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cn_combo_scaffold_1025_23
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17536..17985)
DNA (450bp) protein (150aa)
universal stress protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A72BEA
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihir
universal stress family protein
cn_combo_scaffold_1025_24
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18000..18548)
DNA (549bp) protein (183aa)
Putative esterase of the alpha/beta hydrolase fold protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE59_PELHB
Alpha/beta hydrolase {ECO:0000313|EMBL:KKC33590.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative esterase of the alpha/beta hydrolase fold protein
cn_combo_scaffold_1025_25
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18545..19876)
DNA (1332bp) protein (444aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
Adenylosuccinate lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE58_PELHB
adenylosuccinate lyase
cn_combo_scaffold_1025_26
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19995..20675)
DNA (681bp) protein (227aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicro
Ribulose-phosphate 3-epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE57_PELHB
Ribulose-phosphate 3-epimerase
cn_combo_scaffold_1025_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20772..21515)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D39267
3-demethylubiquinone 3-O-methyltransferase {ECO:0000313|EMBL:KFC68697.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devos
hypothetical protein
cn_combo_scaffold_1025_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21661..22398
DNA (738bp) protein (246aa)
Cytochrome c-type biogenesis protein CcdA (DsbD-like protein) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE55_PELHB
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KKB09842.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhaten
cytochrome c-type biogenesis protein CcdA (DsbD-like protein)
cn_combo_scaffold_1025_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22529..23767
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE54_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09841.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_1025_30
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23753..23917)
DNA (165bp) protein (55aa)
DNA repair protein RadC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE53_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB84073.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
DNA repair protein RadC
Displaying items 1-30 of 51 in total

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