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cn_combo_scaffold_1303

Alias: PEL42_59

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1303_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..304
DNA (303bp) protein (101aa)
50S ribosomal protein L13 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J0_PELHB
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
50S ribosomal protein L13
cn_combo_scaffold_1303_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


306..788
DNA (483bp) protein (161aa)
30S ribosomal protein S9 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J1_PELHB
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.
30S ribosomal protein S9
cn_combo_scaffold_1303_3
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1001..1639
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000361A3EA
Uncharacterized protein {ECO:0000313|EMBL:KKB09323.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cn_combo_scaffold_1303_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1811..3178
DNA (1368bp) protein (456aa)
Proton/glutamate symport protein / Sodium/glutamate symport protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R937_PELHB
Sodium:proton antiporter {ECO:0000313|EMBL:KKB09324.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
proton/glutamate symport protein / Sodium/glutamate symport protein
cn_combo_scaffold_1303_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3224..4480)
DNA (1257bp) protein (419aa)
Putative cytochrome P450 hydroxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH7_PELHB
Cytochrome P450 {ECO:0000313|EMBL:KKB10284.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cytochrome P450 hydroxylase
cn_combo_scaffold_1303_6
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4615..4860
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5K277_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT50984.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium
hypothetical protein
cn_combo_scaffold_1303_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4857..5144
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FCX3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL24944.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Hypothetical protein
cn_combo_scaffold_1303_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5157..5384
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JZR1_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KKB09325.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
cn_combo_scaffold_1303_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5625..6254
DNA (630bp) protein (210aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH5_PELHB
ATP-dependent Clp protease proteolytic subunit
cn_combo_scaffold_1303_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6430..7707
DNA (1278bp) protein (426aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH4_PELHB
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
ATP-dependent Clp protease ATP-binding subunit ClpX
cn_combo_scaffold_1303_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8017..10440
DNA (2424bp) protein (808aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
Lon protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH2_PELHB
ATP-dependent protease La type I
cn_combo_scaffold_1303_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10495..11133)
DNA (639bp) protein (213aa)
Transcriptional regulator, TetR family n=2 Tax=Agrobacterium tumefaciens complex RepID=Q7CUB2_AGRT5
TetR family transcriptional regulator {ECO:0000313|EMBL:KKB77991.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sol
tetR; TetR family transcriptional regulator
cn_combo_scaffold_1303_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11220..12404
DNA (1185bp) protein (395aa)
Tetracycline resistance protein n=2 Tax=Agrobacterium tumefaciens complex RepID=Q7CUB3_AGRT5
MFS transporter {ECO:0000313|EMBL:KFL32550.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
tetA; tetracycline resistance protein rbh
cn_combo_scaffold_1303_14
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12530..12802
DNA (273bp) protein (91aa)
Putative transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2DUF3_9SPHN
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFL31671.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia ribo
ArsR family transcriptional regulator
cn_combo_scaffold_1303_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12795..13442
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PC50_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CDP54309.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
cn_combo_scaffold_1303_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13417..15516)
DNA (2100bp) protein (700aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09330.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cn_combo_scaffold_1303_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15513..16802)
DNA (1290bp) protein (430aa)
UDP-glucose:sterol glucosyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09331.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
UDP-glucose:sterol glucosyltransferase
cn_combo_scaffold_1303_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17224..18438
DNA (1215bp) protein (405aa)
Aspartate aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J6_PELHB
Aminotransferase {ECO:0000313|EMBL:KKB09332.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
aspartate aminotransferase
cn_combo_scaffold_1303_19
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18558..20066
DNA (1509bp) protein (503aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiac
Homoserine dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6J7_PELHB
homoserine dehydrogenase
cn_combo_scaffold_1303_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20099..21085
DNA (987bp) protein (329aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11)
Fructose-1,6-bisphosphatase, GlpX type n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RAV5_9RHIZ
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
cn_combo_scaffold_1303_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21438..21914
DNA (477bp) protein (159aa)
Peptidase M15A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09344.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
peptidase M15A
cn_combo_scaffold_1303_trna_1
unknown

Not on your lists

22007..22078
DNA (72bp)
transferRNA
cn_combo_scaffold_1303_trna_2
unknown

Not on your lists

22132..22203
DNA (72bp)
transferRNA
cn_combo_scaffold_1303_22
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22334..22528)
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC31794.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
cn_combo_scaffold_1303_23
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22775..23587)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Streptomyces sp. AA0539 RepID=UPI00030CB9D9
Iron dicitrate ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB09340.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source
Fe3+-siderophore ABC transporter ATP-binding protein rbh
cn_combo_scaffold_1303_24
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23605..24657)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI000364DAE6
Uncharacterized protein {ECO:0000313|EMBL:KKB09339.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transport system permease protein
cn_combo_scaffold_1303_25
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24654..25682)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI00035FF003
Iron ABC transporter permease {ECO:0000313|EMBL:KKB09338.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
transport system permease protein
cn_combo_scaffold_1303_26
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25690..26634)
DNA (945bp) protein (315aa)
Iron-siderophore uptake ABC system substrate-binding component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09337.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
iron-siderophore uptake ABC system substrate-binding component
cn_combo_scaffold_1303_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26721..27956)
DNA (1236bp) protein (412aa)
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K1_PELHB
S-adenosyl-L-methionine dependent methyltransferase {ECO:0000313|EMBL:KFC71016.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sour
S-adenosyl-L-methionine dependent methyltransferase rbh
cn_combo_scaffold_1303_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28223..30013)
DNA (1791bp) protein (597aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K0_PELHB
Single-stranded DNA exonuclease {ECO:0000313|EMBL:KKB09336.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhaten
single-stranded-DNA-specific exonuclease RecJ
Displaying items 1-30 of 42 in total

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