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cn_combo_scaffold_5232

Alias: PEL42_98

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_5232_1
unknown

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2..112
DNA (111bp) protein (37aa)

This feature has no annotations

cn_combo_scaffold_5232_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(173..1780)
DNA (1608bp) protein (536aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A5414
Putative D,D-dipeptide-binding periplasmic protein DdpA {ECO:0000313|EMBL:EYR79256.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" sour
ABC transporter, periplasmic oligopeptide-binding protein rbh
cn_combo_scaffold_5232_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2105..3028
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003653966
Sulfurtransferase {ECO:0000313|EMBL:KKB13000.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
thiosulfate sulfurtransferase
cn_combo_scaffold_5232_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3127..4338
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035E74BF
Membrane protein {ECO:0000313|EMBL:KKB13001.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
cn_combo_scaffold_5232_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4478..5374
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035CC4DE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG65155.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp.
cn_combo_scaffold_5232_6
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5416..6555)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A50EA
FAD dependent oxidoreductase {ECO:0000313|EMBL:ESZ22413.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobiu
FAD dependent oxidoreductase
cn_combo_scaffold_5232_7
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6667..7026
DNA (360bp) protein (120aa)
DNA-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000366F6C9
Transcriptional regulator {ECO:0000313|EMBL:ESY76936.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium s
XRE family transcriptional regulator
cn_combo_scaffold_5232_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7130..7348
DNA (219bp) protein (73aa)
Helix-turn-helix domain-containing protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BRM7_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KIZ32533.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
helix-turn-helix domain-containing protein
cn_combo_scaffold_5232_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7548..8594)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F02267
Transposase {ECO:0000313|EMBL:KIZ32534.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transposase IS116/IS110/IS902 family protein
cn_combo_scaffold_5232_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8669..9325)
DNA (657bp) protein (219aa)
cation transporter n=1 Tax=Afipia birgiae RepID=UPI0002F5CF5A
Cation transporter {ECO:0000313|EMBL:KIZ42373.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodo
Co/Zn/Cd efflux system component
cn_combo_scaffold_5232_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9349..10221)
DNA (873bp) protein (291aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
UDP pyrophosphate phosphatase n=1 Tax=Afipia birgiae RepID=UPI0002E7CE53
Bacitracin resistance protein BacA
cn_combo_scaffold_5232_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10340..11074)
DNA (735bp) protein (245aa)
cytochrome C biogenesis protein n=1 Tax=Afipia birgiae RepID=UPI0002F7B8AF
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KIZ42371.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseud
cytochrome c biogenesis protein, transmembrane region
cn_combo_scaffold_5232_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11077..11601)
DNA (525bp) protein (175aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal pep
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11N20_MESSB
cn_combo_scaffold_5232_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11683..14736)
DNA (3054bp) protein (1018aa)
Heavy metal translocating P-type ATPase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11N19_MESSB
ATPase P {ECO:0000313|EMBL:ETR79384.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
heavy metal translocating P-type ATPase
cn_combo_scaffold_5232_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14866..15414)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZAP8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KIZ34648.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="
hypothetical protein
cn_combo_scaffold_5232_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15651..17696
DNA (2046bp) protein (682aa)
nadE; NAD synthetase (EC:6.3.1.5) rbh
NAD+ synthase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11N22_MESSB
NAD+ synthase {ECO:0000313|EMBL:ABG61186.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BN
cn_combo_scaffold_5232_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17811..18224
DNA (414bp) protein (138aa)
Transcriptional regulator, MerR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11N15_MESSB
Transcriptional regulator {ECO:0000313|EMBL:KIZ40774.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
MerR family transcriptional regulator
Displaying 17 items

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